RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 GTPBP6O43824 516 aaPredicted RBP13.04□□□□□ -0.32
RTN3-209ENST00000538995 OATP04181 439 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 IGFBP4P22692 258 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 KRT2P35908 639 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 ERVK-21P61565 698 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 PRKCEQ02156 737 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 LETM2Q2VYF4 491 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 KIAA0319LQ8IZA0 1049 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 ARNTL2Q8WYA1 636 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 ZBTB10Q96DT7 871 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 FAM20AQ96MK3 541 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 SAMD11Q96NU1 681 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 YME1L1Q96TA2 773 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 KCNMB3Q9NPA1 279 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 LIMCH1Q9UPQ0 1083 aa13.04□□□□□ -0.32
RTN3-209ENST00000538995 EPOPA6NHQ4 379 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 CHMP2AO43633 222 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 SLC37A4O43826 429 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 ZNF862O60290 1169 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 CD52P31358 61 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 PAK2Q13177 524 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 ODR4Q5SWX8 454 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 FAM117BQ6P1L5 589 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 PIK3AP1Q6ZUJ8 805 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 MIER3Q7Z3K6 550 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 IL27Q8NEV9 243 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 OXER1Q8TDS5 423 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 TNFRSF25Q93038 417 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 LLPHQ9BRT6 129 aaKnown RBP13.03□□□□□ -0.32
RTN3-209ENST00000538995 AGO3Q9H9G7 860 aaKnown RBP13.03□□□□□ -0.32
RTN3-209ENST00000538995 NRBP2Q9NSY0 501 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 MYO9BQ13459 2157 aa13.03□□□□□ -0.32
RTN3-209ENST00000538995 SIP14410 1827 aa13.02□□□□□ -0.32
RTN3-209ENST00000538995 JAK2O60674 1132 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 MMP1P03956 469 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 TMOD1P28289 359 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 RBM25P49756 843 aaKnown RBP13.02□□□□□ -0.33
RTN3-209ENST00000538995 TMEM62Q0P6H9 643 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 ST3GAL1Q11201 340 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 PPP2R5CQ13362 524 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 TRIM29Q14134 588 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 UGCGQ16739 394 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 LINC01465Q8N7H1 131 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 ZSCAN31Q96LW9 406 aaPredicted RBP13.02□□□□□ -0.33
RTN3-209ENST00000538995 MAP7D2Q96T17 732 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 TSPYL2Q9H2G4 693 aaPredicted RBP13.02□□□□□ -0.33
RTN3-209ENST00000538995 CERS4Q9HA82 394 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 SH2B1Q9NRF2 756 aaPredicted RBP13.02□□□□□ -0.33
RTN3-209ENST00000538995 GJB4Q9NTQ9 266 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 LMCD1Q9NZU5 365 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 PADI3Q9ULW8 664 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 MTCH2Q9Y6C9 303 aa13.02□□□□□ -0.33
RTN3-209ENST00000538995 ENPP3O14638 875 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 CCNT1O60563 726 aaKnown RBP13.01□□□□□ -0.33
RTN3-209ENST00000538995 LPXNO60711 386 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 CRYBB1P53674 252 aaPredicted RBP13.01□□□□□ -0.33
RTN3-209ENST00000538995 NR5A1Q13285 461 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 GRB10Q13322 594 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 XKR3Q5GH77 459 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 SLFN12Q8IYM2 578 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 METTL13Q8N6R0 699 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 LINC01599Q8WXQ3 324 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 GJA10Q969M2 543 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 KIF2CQ99661 725 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 NIFKQ9BYG3 293 aaKnown RBP13.01□□□□□ -0.33
RTN3-209ENST00000538995 RC3H2Q9HBD1 1191 aaKnown RBP13.01□□□□□ -0.33
RTN3-209ENST00000538995 VAV3Q9UKW4 847 aa13.01□□□□□ -0.33
RTN3-209ENST00000538995 ADGRA3Q8IWK6 1321 aa13□□□□□ -0.33
RTN3-209ENST00000538995 GPR182O15218 404 aa13□□□□□ -0.33
RTN3-209ENST00000538995 DKC1O60832 514 aaKnown RBP eCLIP13□□□□□ -0.33
RTN3-209ENST00000538995 RPS6KA5O75582 802 aa13□□□□□ -0.33
RTN3-209ENST00000538995 UPP2O95045 317 aa13□□□□□ -0.33
RTN3-209ENST00000538995 PSMC5P62195 406 aa13□□□□□ -0.33
RTN3-209ENST00000538995 HMGN5P82970 282 aaKnown RBP13□□□□□ -0.33
RTN3-209ENST00000538995 TBC1D8BQ0IIM8 1120 aa13□□□□□ -0.33
RTN3-209ENST00000538995 TARBP2Q15633 366 aaKnown RBP13□□□□□ -0.33
RTN3-209ENST00000538995 EARS2Q5JPH6 523 aaKnown RBP13□□□□□ -0.33
RTN3-209ENST00000538995 KRT40Q6A162 431 aa13□□□□□ -0.33
RTN3-209ENST00000538995 SPRED2Q7Z698 418 aa13□□□□□ -0.33
RTN3-209ENST00000538995 NPAS4Q8IUM7 802 aa13□□□□□ -0.33
RTN3-209ENST00000538995 DIS3L2Q8IYB7 885 aaKnown RBP13□□□□□ -0.33
RTN3-209ENST00000538995 SUGCTQ9HAC7 445 aa13□□□□□ -0.33
RTN3-209ENST00000538995 ERVK-5Q9HDB9 667 aa13□□□□□ -0.33
RTN3-209ENST00000538995 THEGQ9P2T0 379 aa13□□□□□ -0.33
RTN3-209ENST00000538995 RWDD3Q9Y3V2 267 aa13□□□□□ -0.33
RTN3-209ENST00000538995 PPME1Q9Y570 386 aa13□□□□□ -0.33
RTN3-209ENST00000538995 TTC28Q96AY4 2481 aa13□□□□□ -0.33
RTN3-209ENST00000538995 VCANP13611 3396 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 RFXAPO00287 272 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 GPR32O75388 356 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 STAG3L1P0CL83 205 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 CLCN3P51790 818 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 CDC42EP1Q00587 391 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 RABEP1Q15276 862 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 SAFBQ15424 915 aaKnown RBP eCLIP12.99□□□□□ -0.33
RTN3-209ENST00000538995 KIZQ2M2Z5 673 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 EFCAB12Q6NXP0 572 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 TRMT1LQ7Z2T5 733 aaKnown RBP12.99□□□□□ -0.33
RTN3-209ENST00000538995 CCDC83Q8IWF9 413 aa12.99□□□□□ -0.33
RTN3-209ENST00000538995 CRIPAKQ8N1N5 446 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms