RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TAF1DQ9H5J8 278 aaPredicted RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 SHTN1A0MZ66 631 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 SLC16A3O15427 465 aaKnown RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 FLOT1O75955 427 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 HSPA9P38646 679 aaKnown RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 ATP1A2P50993 1020 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 IFI16Q16666 785 aaKnown RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 KDM7AQ6ZMT4 941 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 TADA2BQ86TJ2 420 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 TPCN2Q8NHX9 752 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 CYP2W1Q8TAV3 490 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 ISCUQ9H1K1 167 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 METTL14Q9HCE5 456 aaKnown RBP21.04■□□□□ 0.96
VPS28-213ENST00000530983 GCNT4Q9P109 453 aa21.04■□□□□ 0.96
VPS28-213ENST00000530983 SPDYE3A6NKU9 549 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 A6NNZ2 444 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 CEP104O60308 925 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 TUBB8Q3ZCM7 444 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 MCTP2Q6DN12 878 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 GJB7Q6PEY0 223 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 SH3BP5LQ7L8J4 393 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 FBXO11Q86XK2 927 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 ZDHHC15Q96MV8 337 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 ATP8B3O60423 1300 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 F5H6K3 240 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 OPLAHO14841 1288 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 CLIC2O15247 247 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 GCNT3O95395 438 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 RPL13P26373 211 aaKnown RBP21.03■□□□□ 0.96
VPS28-213ENST00000530983 ANXA13P27216 316 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 POLD1P28340 1107 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 CIITAP33076 1130 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 ICA1Q05084 483 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 KLRC3Q07444 240 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 SEPT12Q8IYM1 358 aa21.03■□□□□ 0.96
VPS28-213ENST00000530983 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.03■□□□□ 0.96
VPS28-213ENST00000530983 SMCHD1A6NHR9 2005 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 EML1O00423 815 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 FOSP01100 380 aaPredicted RBP21.02■□□□□ 0.96
VPS28-213ENST00000530983 MMP14P50281 582 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 MEX3CQ5U5Q3 659 aaKnown RBP21.02■□□□□ 0.96
VPS28-213ENST00000530983 EMC10Q5UCC4 262 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 METTL13Q8N6R0 699 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 EIF1ADQ8N9N8 165 aaKnown RBP21.02■□□□□ 0.96
VPS28-213ENST00000530983 RNPC3Q96LT9 517 aaKnown RBP21.02■□□□□ 0.96
VPS28-213ENST00000530983 KCNQ5Q9NR82 932 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 PI4KBQ9UBF8 816 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 FAM198AQ9UFP1 575 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 FAM169AQ9Y6X4 670 aa21.02■□□□□ 0.96
VPS28-213ENST00000530983 A0A087WUV0 522 aaPredicted RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 DDX3XO00571 662 aaKnown RBP eCLIP21.01■□□□□ 0.956e-7■■□□□ 12.4
VPS28-213ENST00000530983 TGFB1I1O43294 461 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 TBCAO75347 108 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 TATDN1Q6P1N9 297 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 SLFN11Q7Z7L1 901 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 BORCS6Q96GS4 357 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 CALR3Q96L12 384 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 EIF2AK1Q9BQI3 630 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 POLR3CQ9BUI4 534 aaPredicted RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 AP1M1Q9BXS5 423 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 FAM107BQ9H098 131 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 IKZF4Q9H2S9 585 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 RGL1Q9NZL6 768 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 RABGAP1Q9Y3P9 1069 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 STK24Q9Y6E0 443 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 ZMYM2Q9UBW7 1377 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 BHMG1C9JSJ3 638 aaPredicted RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 PGRMC1O00264 195 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 EYA4O95677 639 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 NDUFB10O96000 172 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 HOXA13P31271 388 aaPredicted RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 C1orf131Q8NDD1 294 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 BUD13Q9BRD0 619 aaKnown RBP eCLIP21.01■□□□□ 0.954e-7■■■■□ 21.8
VPS28-213ENST00000530983 OLFML3Q9NRN5 406 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 PLAAQ9Y263 795 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 STXBP5LQ9Y2K9 1186 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 NOC2LQ9Y3T9 749 aaKnown RBP21.01■□□□□ 0.95
VPS28-213ENST00000530983 PCDHB13Q9Y5F0 798 aa21.01■□□□□ 0.95
VPS28-213ENST00000530983 GTPBP10A4D1E9 387 aaKnown RBP21■□□□□ 0.95
VPS28-213ENST00000530983 SART1O43290 800 aaKnown RBP21■□□□□ 0.95
VPS28-213ENST00000530983 H2AFZP0C0S5 128 aa21■□□□□ 0.95
VPS28-213ENST00000530983 H2AFVQ71UI9 128 aa21■□□□□ 0.95
VPS28-213ENST00000530983 GMCL1P1Q8NEA9 526 aa21■□□□□ 0.95
VPS28-213ENST00000530983 OLIG1Q8TAK6 271 aa21■□□□□ 0.95
VPS28-213ENST00000530983 ATP6V1G3Q96LB4 118 aa21■□□□□ 0.95
VPS28-213ENST00000530983 GEMIN8Q9NWZ8 242 aaKnown RBP21■□□□□ 0.95
VPS28-213ENST00000530983 A0A0A6YYK5 440 aaPredicted RBP21■□□□□ 0.95
VPS28-213ENST00000530983 SFI1A8K8P3 1242 aa21■□□□□ 0.95
VPS28-213ENST00000530983 GDF11O95390 407 aa21■□□□□ 0.95
VPS28-213ENST00000530983 NR1D1P20393 614 aa21■□□□□ 0.95
VPS28-213ENST00000530983 CUL1Q13616 776 aa21■□□□□ 0.95
VPS28-213ENST00000530983 HLTFQ14527 1009 aaKnown RBP eCLIP21■□□□□ 0.95
VPS28-213ENST00000530983 SYDE2Q5VT97 1194 aa21■□□□□ 0.95
VPS28-213ENST00000530983 RINT1Q6NUQ1 792 aa21■□□□□ 0.95
VPS28-213ENST00000530983 TMEM179Q6ZVK1 233 aa21■□□□□ 0.95
VPS28-213ENST00000530983 VPS36Q86VN1 386 aa21■□□□□ 0.95
VPS28-213ENST00000530983 MICALL1Q8N3F8 863 aa21■□□□□ 0.95
VPS28-213ENST00000530983 GMCL1Q96IK5 515 aa21■□□□□ 0.95
VPS28-213ENST00000530983 SAMM50Q9Y512 469 aa21■□□□□ 0.95
VPS28-213ENST00000530983 GUCY1A3Q02108 690 aa20.99■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms