RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CCAR2Q8N163 923 aaKnown RBP20.92■□□□□ 0.94
VPS28-207ENST00000526977 P2RX5Q93086 422 aa20.92■□□□□ 0.94
VPS28-207ENST00000526977 APBA2Q99767 749 aa20.92■□□□□ 0.94
VPS28-207ENST00000526977 SRRTQ9BXP5 876 aaKnown RBP20.92■□□□□ 0.94
VPS28-207ENST00000526977 KATNBL1Q9H079 304 aa20.92■□□□□ 0.94
VPS28-207ENST00000526977 SLC39A2Q9NP94 309 aa20.92■□□□□ 0.94
VPS28-207ENST00000526977 ARIH2O95376 493 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 SSBP05455 408 aaKnown RBP eCLIP20.91■□□□□ 0.94
VPS28-207ENST00000526977 COPB1P53618 953 aaKnown RBP20.91■□□□□ 0.94
VPS28-207ENST00000526977 ANKRD40Q6AI12 368 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 ATP6V0A1Q93050 837 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 DNAJC19Q96DA6 116 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 THAP9Q9H5L6 903 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 PDGFCQ9NRA1 345 aa20.91■□□□□ 0.94
VPS28-207ENST00000526977 WRAP73Q9P2S5 460 aaPredicted RBP20.91■□□□□ 0.94
VPS28-207ENST00000526977 NRDCO43847 1150 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 XRCC5P13010 732 aaKnown RBP20.9■□□□□ 0.94
VPS28-207ENST00000526977 CYP2B6P20813 491 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 CTGFP29279 349 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 KCNJ6P48051 423 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 EHHADHQ08426 723 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 ACVR2BQ13705 512 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 E4F1Q66K89 784 aaPredicted RBP20.9■□□□□ 0.94
VPS28-207ENST00000526977 DHX37Q8IY37 1157 aaKnown RBP20.9■□□□□ 0.94
VPS28-207ENST00000526977 TC2NQ8N9U0 490 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 CCDC112Q8NEF3 446 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 PIGOQ8TEQ8 1089 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 TRIM47Q96LD4 638 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 VPS16Q9H269 839 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 BHMT2Q9H2M3 363 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 N4BP3O15049 544 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 SUPT20HL2P0C7V6 817 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 ADKP55263 362 aaKnown RBP20.9■□□□□ 0.94
VPS28-207ENST00000526977 SP4Q02446 784 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 CREBRFQ8IUR6 639 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 ANKRD20A12PQ8NF67 263 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 SEPT1Q8WYJ6 367 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 TRMT1Q9NXH9 659 aaKnown RBP20.9■□□□□ 0.94
VPS28-207ENST00000526977 TAB2Q9NYJ8 693 aa20.9■□□□□ 0.94
VPS28-207ENST00000526977 BICDL2A1A5D9 508 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 IDEP14735 1019 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 PSMD2Q13200 908 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 IQSEC1Q6DN90 963 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 SWSAP1Q6NVH7 229 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 GPBP1Q86WP2 473 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 TMEM139Q8IV31 216 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 NOC3LQ8WTT2 800 aaKnown RBP20.89■□□□□ 0.93
VPS28-207ENST00000526977 C16orf45Q96MC5 204 aaPredicted RBP20.89■□□□□ 0.93
VPS28-207ENST00000526977 GABBR1Q9UBS5 961 aa20.89■□□□□ 0.93
VPS28-207ENST00000526977 DBR1Q9UK59 544 aaKnown RBP20.89■□□□□ 0.93
VPS28-207ENST00000526977 SORBS3O60504 671 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 CYP11B2P19099 503 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 CENPPQ6IPU0 288 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 CSGALNACT2Q8N6G5 542 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 SEMA6BQ9H3T3 888 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 KCND2Q9NZV8 630 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 MCM3APO60318 1980 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 DOCK3Q8IZD9 2030 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 IGKV6D-21A0A0A0MT36 114 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 EEF1GP26641 437 aaKnown RBP20.88■□□□□ 0.93
VPS28-207ENST00000526977 LAMC2Q13753 1193 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 ARHGAP39Q9C0H5 1083 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 FLRT1Q9NZU1 646 aa20.88■□□□□ 0.93
VPS28-207ENST00000526977 GSTTP1A0A1W2PQM5 241 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 NOP56O00567 594 aaKnown RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 BACH1O14867 736 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 NKRFO15226 690 aaKnown RBP eCLIP20.87■□□□□ 0.93
VPS28-207ENST00000526977 YWHABP31946 246 aaKnown RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 OTUD6AQ7L8S5 288 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 ANKEF1Q9NU02 776 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 SAGE1Q9NXZ1 904 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 MAFBQ9Y5Q3 323 aaPredicted RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 ZBTB39O15060 712 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 GH1P01241 217 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 IGHA2P01877 340 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 KRT18P05783 430 aaKnown RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 TNNT1P13805 278 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 ADCYAP1R1P41586 468 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 RBL2Q08999 1139 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 UGCGQ16739 394 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 ARSHQ5FYA8 562 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 RINT1Q6NUQ1 792 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 CCDC60Q8IWA6 550 aaPredicted RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 GUF1Q8N442 669 aaKnown RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 EMID1Q96A84 441 aaPredicted RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 SPATA33Q96N06 139 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 GPR20Q99678 358 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 ZNF302Q9NR11 478 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 PANK4Q9NVE7 773 aa20.87■□□□□ 0.93
VPS28-207ENST00000526977 ZHX1Q9UKY1 873 aaPredicted RBP20.87■□□□□ 0.93
VPS28-207ENST00000526977 ITIH6Q6UXX5 1313 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 ARHGEF35A5YM69 484 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 AKR1B15C9JRZ8 316 aaPredicted RBP20.86■□□□□ 0.93
VPS28-207ENST00000526977 TPM2P07951 284 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 HOXD10P28358 340 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 HSDL1Q3SXM5 330 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 DUSP28Q4G0W2 176 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 FAM160B1Q5W0V3 765 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 CEP135Q66GS9 1140 aa20.86■□□□□ 0.93
VPS28-207ENST00000526977 NYAP1Q6ZVC0 841 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms