RNA–Protein interactions for RNA: ENST00000524521.1

VPS28-203, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 564 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-203ENST00000524521 LCHNA4D1U4 455 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 ARHGEF15O94989 841 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 UPP2O95045 317 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 C22orf31O95567 290 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 OATP04181 439 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 IGFBP4P22692 258 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 GUCY1B3Q02153 619 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 PRKCEQ02156 737 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 RABEP1Q15276 862 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 B3GNT9Q6UX72 402 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 TSHZ1Q6ZSZ6 1077 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 METTL13Q8N6R0 699 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 KCNMB3Q9NPA1 279 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 CEP131Q9UPN4 1083 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 MICAL3Q7RTP6 2002 aa23.55■■□□□ 1.36
VPS28-203ENST00000524521 CD52P31358 61 aa23.54■■□□□ 1.36
VPS28-203ENST00000524521 AGO3Q9H9G7 860 aaKnown RBP23.54■■□□□ 1.36
VPS28-203ENST00000524521 GINS2Q9Y248 185 aa23.54■■□□□ 1.36
VPS28-203ENST00000524521 SQORQ9Y6N5 450 aa23.54■■□□□ 1.36
VPS28-203ENST00000524521 WDR81Q562E7 1941 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 MAGEB2O15479 319 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 ADGRE1Q14246 886 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 SAFBQ15424 915 aaKnown RBP eCLIP23.53■■□□□ 1.36
VPS28-203ENST00000524521 POTEDQ86YR6 584 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 USP38Q8NB14 1042 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 ARNTL2Q8WYA1 636 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 HAS1Q92839 578 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 TOP1MTQ969P6 601 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 C8orf76Q96K31 380 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 INSL6Q9Y581 213 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 SIP14410 1827 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 EVPLQ92817 2033 aa23.53■■□□□ 1.36
VPS28-203ENST00000524521 RFXAPO00287 272 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 EML1O00423 815 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 ENPP3O14638 875 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 TBX3O15119 743 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 BAG4O95429 457 aaKnown RBP23.52■■□□□ 1.36
VPS28-203ENST00000524521 HMGN5P82970 282 aaKnown RBP23.52■■□□□ 1.36
VPS28-203ENST00000524521 EFCAB12Q6NXP0 572 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 BANK1Q8NDB2 785 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 CDHR5Q9HBB8 845 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 KDM3AQ9Y4C1 1321 aa23.52■■□□□ 1.36
VPS28-203ENST00000524521 ST18O60284 1047 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 PPP2R5CQ13362 524 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 XKR3Q5GH77 459 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 SPRED2Q7Z698 418 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 FAM184AQ8NB25 1140 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 PPM1EQ8WY54 764 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 PPP1R16BQ96T49 567 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 VAV3Q9UKW4 847 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 PADI3Q9ULW8 664 aa23.51■■□□□ 1.35
VPS28-203ENST00000524521 DDX11L8A8MPP1 907 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 VTNP04004 478 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 TMOD1P28289 359 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 CLCN3P51790 818 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 HTRA4P83105 476 aaPredicted RBP23.5■■□□□ 1.35
VPS28-203ENST00000524521 PAK2Q13177 524 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 KIZQ2M2Z5 673 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 SLFN12Q8IYM2 578 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 LRRC71Q8N4P6 559 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 SUGCTQ9HAC7 445 aa23.5■■□□□ 1.35
VPS28-203ENST00000524521 SEPT9Q9UHD8 586 aaPredicted RBP23.5■■□□□ 1.35
VPS28-203ENST00000524521 LINC01553A4QN01 128 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 EPOPA6NHQ4 379 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 ATP2B1P20020 1258 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 PSMC5P62195 406 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 TBC1D8BQ0IIM8 1120 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 NFX1Q12986 1120 aaKnown RBP23.49■■□□□ 1.35
VPS28-203ENST00000524521 TMEM266Q2M3C6 531 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 MTERF2Q49AM1 385 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 MAP7D2Q96T17 732 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 YME1L1Q96TA2 773 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 NIFKQ9BYG3 293 aaKnown RBP23.49■■□□□ 1.35
VPS28-203ENST00000524521 MTUS1Q9ULD2 1270 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 AKT3Q9Y243 479 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 LOXHD1Q8IVV2 1947 aa23.49■■□□□ 1.35
VPS28-203ENST00000524521 TMEM150BA6NC51 233 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 RPS6KA5O75582 802 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 STBD1O95210 358 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 TARBP2Q15633 366 aaKnown RBP23.48■■□□□ 1.35
VPS28-203ENST00000524521 CCDC85BQ15834 202 aaPredicted RBP23.48■■□□□ 1.35
VPS28-203ENST00000524521 NCAPH2Q6IBW4 605 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 RTN4RL1Q86UN2 441 aaPredicted RBP23.48■■□□□ 1.35
VPS28-203ENST00000524521 TGS1Q96RS0 853 aaKnown RBP23.48■■□□□ 1.35
VPS28-203ENST00000524521 SH2D3AQ9BRG2 576 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 FTHL17Q9BXU8 183 aa23.48■■□□□ 1.35
VPS28-203ENST00000524521 NOC2LQ9Y3T9 749 aaKnown RBP23.48■■□□□ 1.35
VPS28-203ENST00000524521 WNT7AO00755 349 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 GPR32O75388 356 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 P4HBP07237 508 aaKnown RBP23.47■■□□□ 1.35
VPS28-203ENST00000524521 QARSP47897 775 aaKnown RBP23.47■■□□□ 1.35
VPS28-203ENST00000524521 CRYBB1P53674 252 aaPredicted RBP23.47■■□□□ 1.35
VPS28-203ENST00000524521 NLRP11P59045 1033 aaKnown RBP23.47■■□□□ 1.35
VPS28-203ENST00000524521 EPHA7Q15375 998 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 CALCRLQ16602 461 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 LINC01465Q8N7H1 131 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 FBXO18Q8NFZ0 1043 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 TMEM40Q8WWA1 233 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 OSMRQ99650 979 aa23.47■■□□□ 1.35
VPS28-203ENST00000524521 PCDHA12Q9UN75 941 aa23.47■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms