RNA–Protein interactions for RNA: ENST00000524141.5

SPIDR-225, Transcript of scaffold protein involved in DNA repair, human

TSL 2

Gene SPIDR, Length 2,761 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SPIDR-225	ENST00000524141	SLC10A5	Q5PT55	438 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	DENND2C	Q68D51	928 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	GPBP1	Q86WP2	473 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CUL5	Q93034	780 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	HOOK2	Q96ED9	719 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	RSRC1	Q96IZ7	334 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	DPH5	Q9H2P9	285 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	PABPC3	Q9H361	631 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	TRAF3IP3	Q9Y228	551 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	FRMD3	A2A2Y4	597 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	FAM187A	A6NFU0	413 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	BACH1	O14867	736 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ATP2C2	O75185	946 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	FGG	P02679	453 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	ACTN1	P12814	892 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	FER	P16591	822 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLC9A1	P19634	815 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLC8A3	P57103	927 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	DHX34	Q14147	1143 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	HIBCH	Q6NVY1	386 aa	Predicted RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	DPY19L2P1	Q6NXN4	242 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	BANK1	Q8NDB2	785 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	FGFBP2	Q9BYJ0	223 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CARD9	Q9H257	536 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	CCDC134	Q9H6E4	229 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	NOD2	Q9HC29	1040 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	METTL14	Q9HCE5	456 aa	Known RBP	11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLAIN2	Q9P270	581 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	RASAL2	Q9UJF2	1139 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	PNMA2	Q9UL42	364 aa		11.16	□□□□□ -0.62
SPIDR-225	ENST00000524141	TNRC6C	Q9HCJ0	1690 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	EDIL3	O43854	480 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CAND2	O75155	1236 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	KRT18	P05783	430 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CHN1	P15882	459 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	GBP2	P32456	591 aa	Predicted RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CLNS1A	P54105	237 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	DRG2	P55039	364 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	DR1	Q01658	176 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	SLMAP	Q14BN4	828 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	E2F5	Q15329	346 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	PIGW	Q7Z7B1	504 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	FMNL3	Q8IVF7	1028 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CCDC63	Q8NA47	563 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	ATP8B4	Q8TF62	1192 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	HAS1	Q92839	578 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CEP95	Q96GE4	821 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	ERP44	Q9BS26	406 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	CELF4	Q9BZC1	486 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	NHS	Q6T4R5	1651 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	DDX60L	Q5H9U9	1706 aa	Known RBP	11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	WNK3	Q9BYP7	1800 aa		11.15	□□□□□ -0.62
SPIDR-225	ENST00000524141	GTPBP10	A4D1E9	387 aa	Known RBP	11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	RGL2	O15211	777 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	AGT	P01019	485 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	CYP11B2	P19099	503 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	NOV	P48745	357 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	PMS2	P54278	862 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	JAM2	P57087	298 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	ADCY2	Q08462	1091 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	DUPD1	Q68J44	220 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	TLDC1	Q6P9B6	456 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	MAPKAPK5	Q8IW41	473 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	RBM46	Q8TBY0	533 aa	Known RBP	11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	MDM1	Q8TC05	714 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	RFFL	Q8WZ73	363 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	UBA5	Q9GZZ9	404 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.15	□□□□□ -0.63	7e-6	■■■■□ 20.5
SPIDR-225	ENST00000524141	SAP30BP	Q9UHR5	308 aa	Known RBP	11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	KIAA1024	Q9UPX6	916 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	DAAM1	Q9Y4D1	1078 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	NCAN	O14594	1321 aa		11.15	□□□□□ -0.63
SPIDR-225	ENST00000524141	CDK5RAP2	Q96SN8	1893 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	COL14A1	Q05707	1796 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	RGS16	O15492	202 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	CALU	O43852	315 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	BUB1B	O60566	1050 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	ITPK1	Q13572	414 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	PTPRO	Q16827	1216 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	KNOP1	Q1ED39	458 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	C6orf118	Q5T5N4	469 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	ATXN2L	Q8WWM7	1075 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	COA7	Q96BR5	231 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	NLRP3	Q96P20	1036 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	SELENOS	Q9BQE4	189 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	TRIM51	Q9BSJ1	452 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	NYX	Q9GZU5	481 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	ZDHHC18	Q9NUE0	388 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	INTS9	Q9NV88	658 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	11.14	□□□□□ -0.63	4e-7	■■■■■ 38.1
SPIDR-225	ENST00000524141	PARP2	Q9UGN5	583 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	JAG2	Q9Y219	1238 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	USP17L5	A8MUK1	530 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141		E9PMD0	336 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	PDXK	O00764	312 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	OPLAH	O14841	1288 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	SLC16A3	O15427	465 aa	Known RBP	11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	LMNB1	P20700	586 aa		11.14	□□□□□ -0.63
SPIDR-225	ENST00000524141	SCP2	P22307	547 aa		11.14	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms