RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 UBE3AQ05086 875 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 WTAPQ15007 396 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 ASTLQ6HA08 431 aaPredicted RBP13.34□□□□□ -0.27
SDCBP-211ENST00000523441 CES5AQ6NT32 575 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 CMTR1Q8N1G2 835 aaKnown RBP13.34□□□□□ -0.27
SDCBP-211ENST00000523441 PCYT2Q99447 389 aa13.34□□□□□ -0.27
SDCBP-211ENST00000523441 PUF60Q9UHX1 559 aaKnown RBP13.34□□□□□ -0.27
SDCBP-211ENST00000523441 MEIS2O14770 477 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 FSCN2O14926 492 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 ITGB5P18084 799 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 PDE4AP27815 886 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 ERMP1Q7Z2K6 904 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 CATIPQ7Z7H3 387 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 RAB11FIP4Q86YS3 637 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 UBALD2Q8IYN6 164 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 MRPS27Q92552 414 aaKnown RBP13.33□□□□□ -0.28
SDCBP-211ENST00000523441 GPRASP2Q96D09 838 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 RRP36Q96EU6 259 aaKnown RBP13.33□□□□□ -0.28
SDCBP-211ENST00000523441 DSCC1Q9BVC3 393 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 CWH43Q9H720 699 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 ATP6V0A4Q9HBG4 840 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 JPH1Q9HDC5 661 aaPredicted RBP13.33□□□□□ -0.28
SDCBP-211ENST00000523441 SEC63Q9UGP8 760 aaKnown RBP13.33□□□□□ -0.28
SDCBP-211ENST00000523441 DBR1Q9UK59 544 aaKnown RBP13.33□□□□□ -0.28
SDCBP-211ENST00000523441 ST3GAL5Q9UNP4 418 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 PCDHA2Q9Y5H9 948 aa13.33□□□□□ -0.28
SDCBP-211ENST00000523441 SPDYE4A6NLX3 237 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 STK25O00506 426 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 PI15O43692 258 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 LAG3P18627 525 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 KLRC1P26715 233 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 KIZQ2M2Z5 673 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 TPRNQ4KMQ1 711 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 DIEXFQ68CQ4 756 aaKnown RBP13.32□□□□□ -0.28
SDCBP-211ENST00000523441 MTHFD1LQ6UB35 978 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 RALYLQ86SE5 291 aaKnown RBP13.32□□□□□ -0.28
SDCBP-211ENST00000523441 TDRD5Q8NAT2 981 aaKnown RBP13.32□□□□□ -0.28
SDCBP-211ENST00000523441 TMEM87AQ8NBN3 555 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 TMEM40Q8WWA1 233 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 CDHR1Q96JP9 859 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 PGBD1Q96JS3 809 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 ZNF668Q96K58 619 aaPredicted RBP13.32□□□□□ -0.28
SDCBP-211ENST00000523441 OSMRQ99650 979 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 HINFPQ9BQA5 517 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 IL25Q9H293 177 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 ERVK-5Q9HDB9 667 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 SLC9A2Q9UBY0 812 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 SQORQ9Y6N5 450 aa13.32□□□□□ -0.28
SDCBP-211ENST00000523441 MED19A0JLT2 244 aaPredicted RBP13.31□□□□□ -0.28
SDCBP-211ENST00000523441 FSD2A1L4K1 749 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 SPDYE3A6NKU9 549 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 NT5C1B-RDH14C9J2C7 533 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 BACH1O14867 736 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 NT5C2P49902 561 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 STAT5BP51692 787 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 ACTR2P61160 394 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 MCTP2Q6DN12 878 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 PDE12Q6L8Q7 609 aaKnown RBP13.31□□□□□ -0.28
SDCBP-211ENST00000523441 XRRA1Q6P2D8 792 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 KCNT2Q6UVM3 1135 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 SLC24A5Q71RS6 500 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 KIAA2013Q8IYS2 634 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 CCDC82Q8N4S0 544 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 FEZF2Q8TBJ5 459 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 AUTS2Q8WXX7 1259 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 CASP10Q92851 521 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 ZNF558Q96NG5 402 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 PSTPIP2Q9H939 334 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 RGS18Q9NS28 235 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 FBXL21Q9UKT6 434 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 HCFC2Q9Y5Z7 792 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 TAF6LQ9Y6J9 622 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 DCHS1Q96JQ0 3298 aa13.31□□□□□ -0.28
SDCBP-211ENST00000523441 SMIM35A0A1B0GVV1 85 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 PLEKHA8P1O95397 391 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 VTNP04004 478 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 HOXB8P17481 243 aaPredicted RBP13.3□□□□□ -0.28
SDCBP-211ENST00000523441 RXRAP19793 462 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 RFX1P22670 979 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 METAP2P50579 478 aaKnown RBP eCLIP13.3□□□□□ -0.28
SDCBP-211ENST00000523441 NUBP1P53384 320 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 KRT17Q04695 432 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 TROAPQ12815 778 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 KCNC3Q14003 757 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 SMC1AQ14683 1233 aaKnown RBP13.3□□□□□ -0.28
SDCBP-211ENST00000523441 TMEM184AQ6ZMB5 413 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 LRRC55Q6ZSA7 311 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 ABI1Q8IZP0 508 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 METTL13Q8N6R0 699 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 CTCFLQ8NI51 663 aaPredicted RBP13.3□□□□□ -0.28
SDCBP-211ENST00000523441 CYP2W1Q8TAV3 490 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 SDF4Q9BRK5 362 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 ADAM7Q9H2U9 754 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 C1orf112Q9NSG2 853 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 PCDHA6Q9UN73 950 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 PCDHA8Q9Y5H6 950 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 UBIAD1Q9Y5Z9 338 aa13.3□□□□□ -0.28
SDCBP-211ENST00000523441 C9IYK1 514 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 GPR182O15218 404 aa13.29□□□□□ -0.28
SDCBP-211ENST00000523441 CLASP2O75122 1294 aaKnown RBP13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms