RNA–Protein interactions for RNA: ENST00000520579.5

PDGFRB-207, Transcript of platelet derived growth factor receptor beta, humanhuman

TSL 1 (best)

Gene PDGFRB, Length 3,860 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFRB-207ENST00000520579 GPR108Q9NPR9 543 aa10.93□□□□□ -0.66
PDGFRB-207ENST00000520579 CTNNAL1Q9UBT7 734 aa10.93□□□□□ -0.66
PDGFRB-207ENST00000520579 SPATA31A3Q5VYP0 1347 aa10.93□□□□□ -0.66
PDGFRB-207ENST00000520579 NPHP3-ACAD11A0A0J9YXS1 232 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 PGRMC1O00264 195 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 MGRN1O60291 552 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 BMP15O95972 392 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 ATP2A2P16615 1042 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 MSH2P43246 934 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 XRCC4Q13426 336 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 TMEM154Q6P9G4 183 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 KIAA0895Q8NCT3 520 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 WDR66Q8TBY9 1149 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 TRIM9Q9C026 710 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 SEMA4AQ9H3S1 761 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 PLCB1Q9NQ66 1216 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 KLRC4O43908 158 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 LDHAP00338 332 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 TARSP26639 723 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 HSPA9P38646 679 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 NAPAP54920 295 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 MUM1Q2TAK8 710 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 TAB3Q8N5C8 712 aaPredicted RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 FBF1Q8TES7 1133 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 ARHGEF2Q92974 986 aaKnown RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 TTYH3Q9C0H2 523 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 SLAIN2Q9P270 581 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 NKX1-2Q9UD57 310 aaPredicted RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 PLCG2P16885 1265 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 GCLCP48506 637 aaPredicted RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 MTM1Q13496 603 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 PLCB4Q15147 1175 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 GIMAP8Q8ND71 665 aaPredicted RBP10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 CALML4Q96GE6 196 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 RPS6KC1Q96S38 1066 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 ZMYND12Q9H0C1 365 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 ISCUQ9H1K1 167 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 PREBQ9HCU5 417 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 ZFATQ9P243 1243 aa10.92□□□□□ -0.66
PDGFRB-207ENST00000520579 WDR91A4D1P6 747 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 LMBRD2Q68DH5 695 aaPredicted RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 TRIM50Q86XT4 487 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 FBXO25Q8TCJ0 367 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 FAM118BQ9BPY3 351 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 OSGEPQ9NPF4 335 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 C2CD2Q9Y426 696 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 F8VZ95 297 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 PPIP5K2O43314 1243 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 TLR2O60603 784 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 PDE8BO95263 885 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 SLC9A1P19634 815 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 ATP4AP20648 1035 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 ALDH1B1P30837 517 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 PSMC4P43686 418 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 ZNF131P52739 623 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 EIF6P56537 245 aaKnown RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 MAN2A1Q16706 1144 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 DYNLL2Q96FJ2 89 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 RMDN2Q96LZ7 410 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 ZMAT2Q96NC0 199 aaKnown RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 TSG101Q99816 390 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 FAM129AQ9BZQ8 928 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 TMEM260Q9NX78 707 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 GH1P01241 217 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 LINGO3P0C6S8 592 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 SLC5A1P13866 664 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 NCALDP61601 193 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 BICDL1Q6ZP65 573 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 INTS8Q75QN2 995 aaKnown RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 SV2BQ7L1I2 683 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 MAB21L3Q8N8X9 362 aa10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 RPGRQ92834 1020 aaKnown RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 DHTKD1Q96HY7 919 aaPredicted RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 INPP4AQ96PE3 977 aaPredicted RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 PURBQ96QR8 312 aaKnown RBP10.91□□□□□ -0.66
PDGFRB-207ENST00000520579 GSTTP1A0A1W2PQM5 241 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 USP17L3A6NCW0 530 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 USP17L4A6NCW7 530 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 PRPF3O43395 683 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 GFPT2O94808 682 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 UBTFL6P0CB48 400 aaPredicted RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ETS2P15036 469 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 GJC1P36383 396 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 PTK2Q05397 1052 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 DRP2Q13474 957 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 MYBPC3Q14896 1274 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ARHGAP44Q17R89 818 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 GIGYF2Q6Y7W6 1299 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 TMTC3Q6ZXV5 915 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 USP17L1Q7RTZ2 530 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 FBXL16Q8N461 479 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 TTC8Q8TAM2 541 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 NAF1Q96HR8 494 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 PWWP2AQ96N64 755 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 UBE2OQ9C0C9 1292 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 NSRP1Q9H0G5 558 aaKnown RBP10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 HAO1Q9UJM8 370 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 MYMKA6NI61 221 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 SPAG7O75391 227 aa10.9□□□□□ -0.66
PDGFRB-207ENST00000520579 ZCCHC18P0CG32 403 aa10.9□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms