RNA–Protein interactions for RNA: ENST00000518872.1

SYNPO-203, Transcript of synaptopodin, humanhuman

TSL 5

Gene SYNPO, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-203ENST00000518872 C8orf34Q49A92 452 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 SPRED2Q7Z698 418 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 NEK8Q86SG6 692 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 FTHL17Q9BXU8 183 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 GJB4Q9NTQ9 266 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 DDX25Q9UHL0 483 aaKnown RBP33.51■■■□□ 2.95
SYNPO-203ENST00000518872 MTCH2Q9Y6C9 303 aa33.51■■■□□ 2.95
SYNPO-203ENST00000518872 RFXAPO00287 272 aa33.5■■■□□ 2.95
SYNPO-203ENST00000518872 GTPBP6O43824 516 aaPredicted RBP33.5■■■□□ 2.95
SYNPO-203ENST00000518872 ZNF862O60290 1169 aa33.5■■■□□ 2.95
SYNPO-203ENST00000518872 NAP1L4Q99733 375 aaKnown RBP33.5■■■□□ 2.95
SYNPO-203ENST00000518872 MAGEB2O15479 319 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 LPXNO60711 386 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 RALGAPA2Q2PPJ7 1873 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 NLRC5Q86WI3 1866 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 OXER1Q8TDS5 423 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 LMCD1Q9NZU5 365 aa33.49■■■□□ 2.95
SYNPO-203ENST00000518872 ENPP3O14638 875 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 OATP04181 439 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 CD52P31358 61 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 TMEM62Q0P6H9 643 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 GRB10Q13322 594 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 LETM2Q2VYF4 491 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 GJA10Q969M2 543 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 SAMD11Q96NU1 681 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 KCNMB3Q9NPA1 279 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 NRBP2Q9NSY0 501 aa33.48■■■□□ 2.95
SYNPO-203ENST00000518872 CHMP2AO43633 222 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 SLC37A4O43826 429 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 PRKCEQ02156 737 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 MIER3Q7Z3K6 550 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 TNFRSF25Q93038 417 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 FAM20AQ96MK3 541 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 YME1L1Q96TA2 773 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 PADI3Q9ULW8 664 aa33.47■■■□□ 2.95
SYNPO-203ENST00000518872 DLL1O00548 723 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 TBX3O15119 743 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 ST3GAL1Q11201 340 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 UGCGQ16739 394 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 PIK3AP1Q6ZUJ8 805 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 ZNF710Q8N1W2 664 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 LINC01465Q8N7H1 131 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 SUGCTQ9HAC7 445 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 RC3H2Q9HBD1 1191 aaKnown RBP33.46■■■□□ 2.95
SYNPO-203ENST00000518872 BRMS1Q9HCU9 246 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 LIMCH1Q9UPQ0 1083 aa33.46■■■□□ 2.95
SYNPO-203ENST00000518872 DTNBO60941 627 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 UPP2O95045 317 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 KRT2P35908 639 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 PAK2Q13177 524 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 LINC01599Q8WXQ3 324 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 PPM1EQ8WY54 764 aa33.45■■■□□ 2.95
SYNPO-203ENST00000518872 TSPYL2Q9H2G4 693 aaPredicted RBP33.45■■■□□ 2.95
SYNPO-203ENST00000518872 PPP2R5CQ13362 524 aa33.44■■■□□ 2.94
SYNPO-203ENST00000518872 KIF2CQ99661 725 aa33.44■■■□□ 2.94
SYNPO-203ENST00000518872 TTC28Q96AY4 2481 aa33.44■■■□□ 2.94
SYNPO-203ENST00000518872 TARBP2Q15633 366 aaKnown RBP33.43■■■□□ 2.94
SYNPO-203ENST00000518872 CCDC85BQ15834 202 aaPredicted RBP33.43■■■□□ 2.94
SYNPO-203ENST00000518872 ODR4Q5SWX8 454 aa33.43■■■□□ 2.94
SYNPO-203ENST00000518872 RTN4RL1Q86UN2 441 aaPredicted RBP33.43■■■□□ 2.94
SYNPO-203ENST00000518872 CRIPAKQ8N1N5 446 aa33.43■■■□□ 2.94
SYNPO-203ENST00000518872 NIFKQ9BYG3 293 aaKnown RBP33.43■■■□□ 2.94
SYNPO-203ENST00000518872 THEGQ9P2T0 379 aa33.43■■■□□ 2.94
SYNPO-203ENST00000518872 REV3LO60673 3130 aa33.43■■■□□ 2.94
SYNPO-203ENST00000518872 JAK2O60674 1132 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 MMP1P03956 469 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 CRYBB1P53674 252 aaPredicted RBP33.42■■■□□ 2.94
SYNPO-203ENST00000518872 NR5A1Q13285 461 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 XKR3Q5GH77 459 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 EARS2Q5JPH6 523 aaKnown RBP33.42■■■□□ 2.94
SYNPO-203ENST00000518872 TRMT1LQ7Z2T5 733 aaKnown RBP33.42■■■□□ 2.94
SYNPO-203ENST00000518872 ATXN2LQ8WWM7 1075 aaKnown RBP33.42■■■□□ 2.94
SYNPO-203ENST00000518872 C17orf80Q9BSJ5 609 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 ERVK-5Q9HDB9 667 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 VAV3Q9UKW4 847 aa33.42■■■□□ 2.94
SYNPO-203ENST00000518872 VCANP13611 3396 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 CCNT1O60563 726 aaKnown RBP33.41■■■□□ 2.94
SYNPO-203ENST00000518872 GPR32O75388 356 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 TMOD1P28289 359 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 METTL13Q8N6R0 699 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 GDPD5Q8WTR4 605 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 TMEM40Q8WWA1 233 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 ZNF689Q96CS4 500 aaPredicted RBP33.41■■■□□ 2.94
SYNPO-203ENST00000518872 CDHR5Q9HBB8 845 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 PRDM6Q9NQX0 595 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 MTUS1Q9ULD2 1270 aa33.41■■■□□ 2.94
SYNPO-203ENST00000518872 BRWD1Q9NSI6 2320 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 RPS6KA5O75582 802 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 STBD1O95210 358 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 RBM25P49756 843 aaKnown RBP33.4■■■□□ 2.94
SYNPO-203ENST00000518872 EFCAB12Q6NXP0 572 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 FBXO22Q8NEZ5 403 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 HAS1Q92839 578 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 MAP7D2Q96T17 732 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 LLPHQ9BRT6 129 aaKnown RBP33.4■■■□□ 2.94
SYNPO-203ENST00000518872 COL25A1Q9BXS0 654 aaPredicted RBP33.4■■■□□ 2.94
SYNPO-203ENST00000518872 TMX1Q9H3N1 280 aa33.4■■■□□ 2.94
SYNPO-203ENST00000518872 NOC2LQ9Y3T9 749 aaKnown RBP33.4■■■□□ 2.94
SYNPO-203ENST00000518872 ADGRA3Q8IWK6 1321 aa33.39■■■□□ 2.94
SYNPO-203ENST00000518872 EPC2Q52LR7 807 aa33.39■■■□□ 2.94
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms