RNA–Protein interactions for RNA: ENST00000514402.1

MATR3-223, Transcript of matrin 3, human

TSL 2

Gene MATR3, Length 556 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-223	ENST00000514402	SMPD4	Q9NXE4	827 aa		6.16	□□□□□ -1.42
MATR3-223	ENST00000514402		H7C1D1	291 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	CBX4	O00257	560 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	TRAF5	O00463	557 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	CNOT4	O95628	575 aa	Known RBP	6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	SDS	P20132	328 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	ALDH6A1	Q02252	535 aa	Known RBP	6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	MAP3K12	Q12852	859 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	ZNF460	Q14592	562 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	ZNF174	Q15697	407 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	PIK3R6	Q5UE93	754 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	NOP9	Q86U38	636 aa	Known RBP	6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	CIR1	Q86X95	450 aa	Predicted RBP	6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	NME9	Q86XW9	330 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	NINJ1	Q92982	152 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	FEZ1	Q99689	392 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	JADE2	Q9NQC1	790 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	FANCL	Q9NW38	375 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402	PLAA	Q9Y263	795 aa		6.15	□□□□□ -1.42
MATR3-223	ENST00000514402		A0A0G2JNJ9	132 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	PTPDC1	A2A3K4	754 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	PRAMEF22	A3QJZ6	481 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	CDC45	O75419	566 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	HMGCR	P04035	888 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	JMJD7	P0C870	316 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	APEX1	P27695	318 aa	Known RBP	6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	KIF11	P52732	1056 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	NFKB2	Q00653	900 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	NFYC	Q13952	458 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	CFAP100	Q494V2	611 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	CDCA2	Q69YH5	1023 aa	Predicted RBP	6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	DBX2	Q6ZNG2	339 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	RTN4RL1	Q86UN2	441 aa	Predicted RBP	6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	DNER	Q8NFT8	737 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	LOXL4	Q96JB6	756 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	MEGF9	Q9H1U4	602 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	PCIF1	Q9H4Z3	704 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402		Q9UFV3	132 aa		6.14	□□□□□ -1.43
MATR3-223	ENST00000514402	ENPP3	O14638	875 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	ZNF888	P0CJ79	500 aa	Predicted RBP	6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	ADAM17	P78536	824 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	MOGS	Q13724	837 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	EPHA7	Q15375	998 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	TRIM68	Q6AZZ1	485 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	GRAMD4	Q6IC98	578 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	OTOP2	Q7RTS6	562 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	GPR155	Q7Z3F1	870 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	CHST13	Q8NET6	341 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	FOXRED1	Q96CU9	486 aa	Predicted RBP	6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	KRTAP9-3	Q9BYQ3	159 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	VWA7	Q9Y334	891 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	CD2AP	Q9Y5K6	639 aa		6.13	□□□□□ -1.43
MATR3-223	ENST00000514402	PATE3	B3GLJ2	98 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	GPR42	O15529	346 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	PRL	P01236	227 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	RAC3	P60763	192 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	CD83	Q01151	205 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	ROM1	Q03395	351 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	ADCY1	Q08828	1119 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	LRSAM1	Q6UWE0	723 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	LIMS2	Q7Z4I7	341 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	NIM1K	Q8IY84	436 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	AHI1	Q8N157	1196 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	PPM1K	Q8N3J5	372 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	KIAA1958	Q8N8K9	716 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	LMF1	Q96S06	567 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	CDK5RAP1	Q96SZ6	601 aa	Known RBP	6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	KRTAP17-1	Q9BYP8	105 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	SEMA4A	Q9H3S1	761 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	ZKSCAN5	Q9Y2L8	839 aa		6.12	□□□□□ -1.43
MATR3-223	ENST00000514402	UBA6	A0AVT1	1052 aa	Predicted RBP	6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	C1QTNF3-AMACR	E9PGA6	284 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	DVL2	O14641	736 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	KRT37	O76014	449 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	MEOX1	P50221	254 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	KCNQ1	P51787	676 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	TAF7L	Q5H9L4	462 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	LRRTM3	Q86VH5	581 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	JAZF1	Q86VZ6	243 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	ZZZ3	Q8IYH5	903 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	DVL3	Q92997	716 aa	Predicted RBP	6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	LPP	Q93052	612 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	NEIL1	Q96FI4	390 aa	Predicted RBP	6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	MAML3	Q96JK9	1138 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	C16orf92	Q96LL3	132 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	MYRF	Q9Y2G1	1151 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	SPO11	Q9Y5K1	396 aa		6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	MRPL42	Q9Y6G3	142 aa	Known RBP	6.11	□□□□□ -1.43
MATR3-223	ENST00000514402	PMS2P1	A4D2B8	440 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	ARHGAP6	O43182	974 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	GAS7	O60861	476 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	F2	P00734	622 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	ADCY8	P40145	1251 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	SESN2	P58004	480 aa	Predicted RBP	6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	TKFC	Q3LXA3	575 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	TTC38	Q5R3I4	469 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	LCE5A	Q5TCM9	118 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	AGBL4	Q5VU57	503 aa		6.1	□□□□□ -1.43
MATR3-223	ENST00000514402	USP30	Q70CQ3	517 aa		6.1	□□□□□ -1.43

Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms