RNA–Protein interactions for RNA: ENST00000507293.1

HMGCS1-204, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 1 (best)

Gene HMGCS1, Length 708 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-204ENST00000507293 ATP4AP20648 1035 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 GATMP50440 423 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 AKAP17AQ02040 695 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 NFX1Q12986 1120 aaKnown RBP13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 PRR16Q569H4 304 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 ZNF484Q5JVG2 852 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 MCTP2Q6DN12 878 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 CKAP2LQ8IYA6 745 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 PPP1R16BQ96T49 567 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 LRFN3Q9BTN0 628 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 PLVAPQ9BX97 442 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 ERVK-5Q9HDB9 667 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 LRFN2Q9ULH4 789 aa13.1□□□□□ -0.31
HMGCS1-204ENST00000507293 FAM86C2PA6NEL3 165 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 ZBTB42B2RXF5 422 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 MGEA5O60502 916 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 C22orf31O95567 290 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 GNA11P29992 359 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 SSTR3P32745 418 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 HYAL1Q12794 435 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 TMEM31Q5JXX7 168 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 ZNF746Q6NUN9 644 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 TRMT1LQ7Z2T5 733 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 KIAA0319LQ8IZA0 1049 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 GJD3Q8N144 294 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 TMEM40Q8WWA1 233 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 BBXQ8WY36 941 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 P2RX5Q93086 422 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 SLC26A6Q9BXS9 759 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 RNF26Q9BY78 433 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 AGXT2Q9BYV1 514 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 CDHR5Q9HBB8 845 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 ALG13Q9NP73 1137 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 TBC1D22BQ9NU19 505 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 VPS54Q9P1Q0 977 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 TCEAL9Q9UHQ7 104 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 PLAGL2Q9UPG8 496 aa13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 NOC2LQ9Y3T9 749 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-204ENST00000507293 PI4K2BG5E9Z4 385 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 NCK2O43639 380 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 RPS6KA5O75582 802 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 PSAPP07602 524 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 CIITAP33076 1130 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 GTF2F1P35269 517 aaKnown RBP eCLIP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 LTBRP36941 435 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 SARSP49591 514 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 CCT2P78371 535 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 NTRK3Q16288 839 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 CTC1Q2NKJ3 1217 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 SMAP1Q8IYB5 467 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 FBXL16Q8N461 479 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 CCDC148Q8NFR7 591 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 CCDC136Q96JN2 1154 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 OSMRQ99650 979 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 NCOA5Q9HCD5 579 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 C11orf16Q9NQ32 467 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 GABBR1Q9UBS5 961 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 PCDHA10Q9Y5I2 948 aa13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 MAFBQ9Y5Q3 323 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-204ENST00000507293 TBX10O75333 385 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 REC8O95072 547 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 VTNP04004 478 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 ITGB1P05556 798 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 IFNAR1P17181 557 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 DNAJB1P25685 340 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 PSMA5P28066 241 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 PDIA3P30101 505 aaKnown RBP13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 DLX2Q07687 328 aaPredicted RBP13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 CAMK1Q14012 370 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 CLUL1Q15846 466 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 KIZQ2M2Z5 673 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 NAALADL2Q58DX5 795 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 ODR4Q5SWX8 454 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 KLHL23Q8NBE8 558 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 BICD2Q8TD16 824 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 LENG9Q96B70 501 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 ADAM2Q99965 735 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 IGFLR1Q9H665 355 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 C1orf112Q9NSG2 853 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 ST3GAL5Q9UNP4 418 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 FAM50BQ9Y247 325 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 SAMM50Q9Y512 469 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 PCDHB7Q9Y5E2 793 aa13.07□□□□□ -0.32
HMGCS1-204ENST00000507293 DENND3A2RUS2 1198 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 WDR64B1ANS9 1081 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 GPR182O15218 404 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 LINC01565O15544 149 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 EDIL3O43854 480 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 GPR37L1O60883 481 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 IRS1P35568 1242 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 CLCN3P51790 818 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 CRYBB1P53674 252 aaPredicted RBP13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 EVCP57679 992 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 ZP2Q05996 745 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 ADGRD2Q7Z7M1 963 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 FAM228AQ86W67 206 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 METTL13Q8N6R0 699 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 SPPL3Q8TCT6 385 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 FAM167AQ96KS9 214 aa13.06□□□□□ -0.32
HMGCS1-204ENST00000507293 RGS18Q9NS28 235 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms