RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 USP38Q8NB14 1042 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 BANK1Q8NDB2 785 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 JPH2Q9BR39 696 aaPredicted RBP18.37■□□□□ 0.53
SF3A1-209ENST00000496189 ZBED2Q9BTP6 218 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 IFIH1Q9BYX4 1025 aaKnown RBP18.37■□□□□ 0.53
SF3A1-209ENST00000496189 VAV3Q9UKW4 847 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 TRPV2Q9Y5S1 764 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 CDY2AQ9Y6F7 541 aa18.37■□□□□ 0.53
SF3A1-209ENST00000496189 AMHP03971 560 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 DNAJB2P25686 324 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 DNM2P50570 870 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 UGCGQ16739 394 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 OTUD6AQ7L8S5 288 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 DBF4BQ8NFT6 615 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 NEK9Q8TD19 979 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 TIFAQ96CG3 184 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 FOXD4L1Q9NU39 408 aa18.36■□□□□ 0.53
SF3A1-209ENST00000496189 ZNF862O60290 1169 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 C22orf31O95567 290 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 OR52Z1P0C646 297 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 GHRP10912 638 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 WDR5P61964 334 aaKnown RBP18.35■□□□□ 0.53
SF3A1-209ENST00000496189 TMEM62Q0P6H9 643 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 MBTPS1Q14703 1052 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 ZNF174Q15697 407 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 MTERF2Q49AM1 385 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 PLEKHG4Q58EX7 1191 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 RILPL1Q5EBL4 403 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 EFCAB12Q6NXP0 572 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 TSHZ1Q6ZSZ6 1077 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 ERMNQ8TAM6 284 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 ZBTB10Q96DT7 871 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 SCLT1Q96NL6 688 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 LXNQ9BS40 222 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 CELF4Q9BZC1 486 aaKnown RBP18.35■□□□□ 0.53
SF3A1-209ENST00000496189 RAB34Q9BZG1 259 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 ZSWIM4Q9H7M6 989 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 SLC28A3Q9HAS3 691 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 AKT3Q9Y243 479 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 GINS2Q9Y248 185 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 PPME1Q9Y570 386 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 SQORQ9Y6N5 450 aa18.35■□□□□ 0.53
SF3A1-209ENST00000496189 VPS37CA5D8V6 355 aaPredicted RBP18.34■□□□□ 0.53
SF3A1-209ENST00000496189 EML1O00423 815 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 CHRNA1P02708 482 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 CDC42EP1Q00587 391 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 GPNMBQ14956 572 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 FAM43BQ6ZT52 329 aaPredicted RBP18.34■□□□□ 0.53
SF3A1-209ENST00000496189 VWCEQ96DN2 955 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 NIFKQ9BYG3 293 aaKnown RBP18.34■□□□□ 0.53
SF3A1-209ENST00000496189 PBX4Q9BYU1 374 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 SUGCTQ9HAC7 445 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 PCDHA11Q9Y5I1 949 aa18.34■□□□□ 0.53
SF3A1-209ENST00000496189 KDM3AQ9Y4C1 1321 aa18.33■□□□□ 0.53
SF3A1-209ENST00000496189 GRXCR1A8MXD5 290 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 ZBTB42B2RXF5 422 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 LAD1O00515 517 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 CYP4A11Q02928 519 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 MGAT3Q09327 533 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 PAK2Q13177 524 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 FBXO47Q5MNV8 452 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 HERC6Q8IVU3 1022 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 TPH2Q8IWU9 490 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 C4orf19Q8IY42 314 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 SLC7A3Q8WY07 619 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 DYDC2Q96IM9 177 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 MTMR9Q96QG7 549 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 STK24Q9Y6E0 443 aa18.33■□□□□ 0.52
SF3A1-209ENST00000496189 TLL1O43897 1013 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 SYT1P21579 422 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 CLCN3P51790 818 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 SPIRE1Q08AE8 756 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 HAUS3Q68CZ6 603 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 Q7L0L9 218 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 BRAPQ7Z569 592 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 KIAA0319LQ8IZA0 1049 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 MYOCDQ8IZQ8 938 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 CEP170P1Q96L14 293 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 EIF2AK1Q9BQI3 630 aaKnown RBP18.32■□□□□ 0.52
SF3A1-209ENST00000496189 FTHL17Q9BXU8 183 aa18.32■□□□□ 0.52
SF3A1-209ENST00000496189 WDR81Q562E7 1941 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 WNT7AO00755 349 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 SLC34A2O95436 690 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 YWHABP31946 246 aaKnown RBP18.31■□□□□ 0.52
SF3A1-209ENST00000496189 RFC5P40937 340 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 TECP42680 631 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 POLGP54098 1239 aaPredicted RBP18.31■□□□□ 0.52
SF3A1-209ENST00000496189 CTTNQ14247 550 aaKnown RBP18.31■□□□□ 0.52
SF3A1-209ENST00000496189 LPIN1Q14693 890 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 PPP2R2DQ66LE6 453 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 LRRC71Q8N4P6 559 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 FAM161BQ96MY7 647 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 TMEM60Q9H2L4 133 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 CYP26B1Q9NR63 512 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 RNF216Q9NWF9 866 aaPredicted RBP18.31■□□□□ 0.52
SF3A1-209ENST00000496189 RGL1Q9NZL6 768 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 LAMA3Q16787 3333 aa18.31■□□□□ 0.52
SF3A1-209ENST00000496189 POTEMA6NI47 508 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 GPR182O15218 404 aa18.3■□□□□ 0.52
SF3A1-209ENST00000496189 STX6O43752 255 aa18.3■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms