RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 HYIQ5T013 277 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 SOGA3Q5TF21 947 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 C12orf60Q5U649 245 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 H2AFVQ71UI9 128 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 LRRC34Q8IZ02 419 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 REXO1Q8N1G1 1221 aaKnown RBP10.52□□□□□ -0.72
SYNE1-230ENST00000495090 AGAP11Q8TF27 550 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 DDX17Q92841 729 aaKnown RBP10.52□□□□□ -0.72
SYNE1-230ENST00000495090 SLC4A9Q96Q91 983 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 ERP44Q9BS26 406 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 CARD9Q9H257 536 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 CORO1CQ9ULV4 474 aaPredicted RBP10.52□□□□□ -0.72
SYNE1-230ENST00000495090 NCANO14594 1321 aa10.52□□□□□ -0.72
SYNE1-230ENST00000495090 RGS16O15492 202 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 SMNDC1O75940 238 aaKnown RBP eCLIP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 WFS1O76024 890 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 RARAP10276 462 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 UCHL3P15374 230 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 IBSPP21815 317 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 NCALDP61601 193 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 ARID5AQ03989 594 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 KLRC3Q07444 240 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 LRRC41Q15345 812 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 NAIF1Q69YI7 327 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 MFSD5Q6N075 450 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 TAOK1Q7L7X3 1001 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 FRMD5Q7Z6J6 570 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 FBXO33Q7Z6M2 555 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 TBC1D1Q86TI0 1168 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 PNMA8AQ86V59 439 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 GLIS3Q8NEA6 775 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 SNX29Q8TEQ0 813 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 ZNF483Q8TF39 744 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 IFT74Q96LB3 600 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 KCTD10Q9H3F6 313 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 BMP2KQ9NSY1 1161 aaPredicted RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 SPATS2LQ9NUQ6 558 aaKnown RBP10.52□□□□□ -0.73
SYNE1-230ENST00000495090 PANK4Q9NVE7 773 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 SLC5A4Q9NY91 659 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 PARP2Q9UGN5 583 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 AMFRQ9UKV5 643 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 PCDHA2Q9Y5H9 948 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 KDM3AQ9Y4C1 1321 aa10.52□□□□□ -0.73
SYNE1-230ENST00000495090 KLRF2D3W0D1 207 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 CETN3O15182 167 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 NTSR2O95665 410 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 HSPA6P17066 643 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 SKIV2L2P42285 1042 aaKnown RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 CCNHP51946 323 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 DR1Q01658 176 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 KCNH2Q12809 1159 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 BNIP1Q12981 228 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 CCDC65Q8IXS2 484 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 THOC1Q96FV9 657 aaKnown RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 FAM84BQ96KN1 310 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 ZNF570Q96NI8 536 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 ELAC2Q9BQ52 826 aaKnown RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 SELENOSQ9BQE4 189 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 NT5C3AQ9H0P0 336 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 DPH5Q9H2P9 285 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 SLC24A3Q9HC58 644 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 RASAL2Q9UJF2 1139 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 DAAM1Q9Y4D1 1078 aa10.51□□□□□ -0.73
SYNE1-230ENST00000495090 USP15Q9Y4E8 981 aaPredicted RBP10.51□□□□□ -0.73
SYNE1-230ENST00000495090 FRMD3A2A2Y4 597 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SHBGP04278 402 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 GCKP35557 465 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 JAM2P57087 298 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 C1QBPQ07021 282 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 BLMHQ13867 455 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 CAPRIN2Q6IMN6 1127 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 MIS18BP1Q6P0N0 1132 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 DAAM2Q86T65 1068 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 APLFQ8IW19 511 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SPDL1Q96EA4 605 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SAAL1Q96ER3 474 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SH3GL3Q99963 347 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 TMEM47Q9BQJ4 181 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 MXD3Q9BW11 206 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 CELF4Q9BZC1 486 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 GOLPH3Q9H4A6 298 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 LRRC4CQ9HCJ2 640 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ARHGEF3Q9NR81 526 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 BSDC1Q9NW68 430 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 MCM9Q9NXL9 1143 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SEC63Q9UGP8 760 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 AGAP1Q9UPQ3 857 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 GTPBP10A4D1E9 387 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 DDX3YO15523 660 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 SUN1O94901 812 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 UBOX5O94941 541 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 FGGP02679 453 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 AFPP02771 609 aaKnown RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 TSPY3P0CV98 308 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 TSPY8P0CW00 308 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ALDH5A1P51649 535 aaPredicted RBP10.5□□□□□ -0.73
SYNE1-230ENST00000495090 COPS2P61201 443 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 MAPK7Q13164 816 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 ADAM9Q13443 819 aa10.5□□□□□ -0.73
SYNE1-230ENST00000495090 CNGA2Q16280 664 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms