RNA–Protein interactions for RNA: ENST00000492407.1

HDAC3-212, Transcript of histone deacetylase 3, humanhuman

TSL 5

Gene HDAC3, Length 782 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-212ENST00000492407 ZNF746Q6NUN9 644 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 SLC24A5Q71RS6 500 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 CENPQQ7L2Z9 268 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 KIAA0319LQ8IZA0 1049 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 SPPL3Q8TCT6 385 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 LINC01599Q8WXQ3 324 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 BBXQ8WY36 941 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 KHSRPQ92945 711 aaKnown RBP eCLIP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 KCNB2Q92953 911 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 ZMYND12Q9H0C1 365 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 FAM49AQ9H0Q0 323 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 ELAC1Q9H777 363 aaKnown RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 C6orf50Q9HD87 102 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 ZNF302Q9NR11 478 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 AAASQ9NRG9 546 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 RGS18Q9NS28 235 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 FAM217BQ9NTX9 383 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 RAPGEFL1Q9UHV5 662 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 BRPF3Q9ULD4 1205 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 LRFN2Q9ULH4 789 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 CEP131Q9UPN4 1083 aa10.38□□□□□ -0.75
HDAC3-212ENST00000492407 MAFBQ9Y5Q3 323 aaPredicted RBP10.38□□□□□ -0.75
HDAC3-212ENST00000492407 TCF20Q9UGU0 1960 aaKnown RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 IGLV3-22A0A075B6J6 115 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 KLF18A0A0U1RQI7 1052 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 IPO5O00410 1097 aaKnown RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 BACH1O14867 736 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 MAGEB2O15479 319 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 PRPF3O43395 683 aaKnown RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 EYA4O95677 639 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 CCNE2O96020 404 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 CIITAP33076 1130 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 CRYBB1P53674 252 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 FAM189BP81408 668 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 SMAD4Q13485 552 aaKnown RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 CAMK1Q14012 370 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 RALGAPA2Q2PPJ7 1873 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 PLA2G4DQ86XP0 818 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 FAM177A1Q8N128 213 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 EFHBQ8N7U6 833 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 BICD2Q8TD16 824 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 CDCA3Q99618 268 aaPredicted RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 ERVK-5Q9HDB9 667 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 PCDHB7Q9Y5E2 793 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 MRPL42Q9Y6G3 142 aaKnown RBP10.37□□□□□ -0.75
HDAC3-212ENST00000492407 NID2Q14112 1375 aa10.37□□□□□ -0.75
HDAC3-212ENST00000492407 FAM86B1E9PN63 330 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 MBTPS2O43462 519 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 CDC45O75419 566 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 RPS6KA5O75582 802 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 ITGB1P05556 798 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 PSAPP07602 524 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 FAM86B2P0C5J1 330 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 METAP2P50579 478 aaKnown RBP eCLIP10.36□□□□□ -0.75
HDAC3-212ENST00000492407 CDC42EP1Q00587 391 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 COASYQ13057 564 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 SWSAP1Q6NVH7 229 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 PDXDC2PQ6P474 469 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 RAB11FIP4Q86YS3 637 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 RASEFQ8IZ41 740 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 REXO1Q8N1G1 1221 aaKnown RBP10.36□□□□□ -0.75
HDAC3-212ENST00000492407 KLHL23Q8NBE8 558 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 RSPH1Q8WYR4 309 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 MSLNLQ96KJ4 702 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 FAM167AQ96KS9 214 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 ZNF577Q9BSK1 485 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 TMX1Q9H3N1 280 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 ALG13Q9NP73 1137 aaKnown RBP10.36□□□□□ -0.75
HDAC3-212ENST00000492407 TMEM161AQ9NX61 479 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 TCEAL9Q9UHQ7 104 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 CD207Q9UJ71 328 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 LZTS1Q9Y250 596 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 PCDHB12Q9Y5F1 795 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 PCDHA10Q9Y5I2 948 aa10.36□□□□□ -0.75
HDAC3-212ENST00000492407 TTC3P53804 2025 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 DENND3A2RUS2 1198 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 CARNS1A5YM72 827 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 ZBTB42B2RXF5 422 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 C9IYK1 514 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 HOXA2O43364 376 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 EPB41L2O43491 1005 aaKnown RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 C22orf31O95567 290 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 NCLP19338 710 aaKnown RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 TMOD1P28289 359 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 CDC27P30260 824 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 ADD1P35611 737 aaKnown RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 USP11P51784 963 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 EVCP57679 992 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 IRX6P78412 446 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 NFX1Q12986 1120 aaKnown RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 PKN1Q16512 942 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 ADCK5Q3MIX3 580 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 HERC4Q5GLZ8 1057 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 EP400NLQ6ZTU2 488 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 CCDC60Q8IWA6 550 aaPredicted RBP10.35□□□□□ -0.75
HDAC3-212ENST00000492407 CCDC148Q8NFR7 591 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 TRAPPC12Q8WVT3 735 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 POF1BQ8WVV4 589 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 ZBTB10Q96DT7 871 aa10.35□□□□□ -0.75
HDAC3-212ENST00000492407 RIT2Q99578 217 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms