RNA–Protein interactions for RNA: ENST00000492280.5

HMGN1-220, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 5

Gene HMGN1, Length 2,707 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-220ENST00000492280 LXNQ9BS40 222 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 SELENOOQ9BVL4 669 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 HYOU1Q9Y4L1 999 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 FKBP1AP62942 108 aaKnown RBP13.65□□□□□ -0.22
HMGN1-220ENST00000492280 DPY19L2P1Q6NXN4 242 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 WDR11Q9BZH6 1224 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 PCIF1Q9H4Z3 704 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 GOPCQ9HD26 462 aa13.65□□□□□ -0.22
HMGN1-220ENST00000492280 TBX3O15119 743 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 GFPT2O94808 682 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 ITGB5P18084 799 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 MAPK8IP2Q13387 824 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 SLC18A3Q16572 532 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 EDRF1Q3B7T1 1238 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 CEP55Q53EZ4 464 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 FAM151AQ8WW52 585 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 VCPKMTQ9H867 229 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 PPP1R1BQ9UD71 204 aaPredicted RBP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 HERC5Q9UII4 1024 aaKnown RBP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 TRAF3IP3Q9Y228 551 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 SSU72P8A0A1W2PR75 194 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 MARSP56192 900 aaKnown RBP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 SPDYE2Q495Y8 402 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 CBWD6Q4V339 395 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 CBWD3Q5JTY5 395 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 CBWD5Q5RIA9 395 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 SND1Q7KZF4 910 aaKnown RBP eCLIP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 HOOK2Q96ED9 719 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 SIX2Q9NPC8 291 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 TYW1Q9NV66 732 aaKnown RBP13.64□□□□□ -0.23
HMGN1-220ENST00000492280 CCPG1Q9ULG6 757 aa13.64□□□□□ -0.23
HMGN1-220ENST00000492280 GNA14O95837 355 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 ALAS1P13196 640 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 NOP2P46087 812 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 EPHA7Q15375 998 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 ODR4Q5SWX8 454 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PRAMEF18Q5VWM3 479 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 POTEAQ6S8J7 498 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 C1orf186Q6ZWK4 172 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 IRF2BP2Q7Z5L9 587 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 TTLL6Q8N841 843 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FAM84AQ96KN4 292 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 RAVER2Q9HCJ3 691 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 HPCAL4Q9UM19 191 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 SAMM50Q9Y512 469 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 A0A0U1RQG5 324 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 GRID2IPA4D2P6 1211 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 IPO5O00410 1097 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PJA2O43164 708 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 CALUO43852 315 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 EPB41P11171 864 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 EIF2AK2P19525 551 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 GGCXP38435 758 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PRELPP51888 382 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 IQCEQ6IPM2 695 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 ZC3H3Q8IXZ2 948 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 WNK4Q96J92 1243 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FIZ1Q96SL8 496 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 GMLQ99445 158 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 RANBP17Q9H2T7 1088 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 RABEP2Q9H5N1 569 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 TNS1Q9HBL0 1735 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PIK3CDO00329 1044 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 WNT10BO00744 389 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PDXKO00764 312 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 RNF40O75150 1001 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 NPM3O75607 178 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 HNRNPH2P55795 449 aaKnown RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 MUM1L1Q5H9M0 696 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FAM178BQ8IXR5 827 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FAM186BQ8IYM0 893 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 CAMKK2Q96RR4 588 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 POLR3CQ9BUI4 534 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FAM204AQ9H8W3 233 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 PARVGQ9HBI0 331 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 GPRC5CQ9NQ84 441 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 CHORDC1Q9UHD1 332 aaPredicted RBP13.63□□□□□ -0.23
HMGN1-220ENST00000492280 FAM184BQ9ULE4 1060 aa13.63□□□□□ -0.23
HMGN1-220ENST00000492280 ZC3H4Q9UPT8 1303 aaKnown RBP13.62□□□□□ -0.23
HMGN1-220ENST00000492280 SYF2O95926 243 aaKnown RBP13.62□□□□□ -0.23
HMGN1-220ENST00000492280 CYP3A4P08684 503 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 CAP2P40123 477 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 ARHGAP44Q17R89 818 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 CCNI2Q6ZMN8 369 aaPredicted RBP13.62□□□□□ -0.23
HMGN1-220ENST00000492280 PPP4R3CPQ6ZMV5 832 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 PALB2Q86YC2 1186 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 SLC5A5Q92911 643 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 IQCDQ96DY2 449 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 GBP3Q9H0R5 595 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 HIP1RO75146 1068 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 EIF3JO75822 258 aaKnown RBP13.62□□□□□ -0.23
HMGN1-220ENST00000492280 ABCB4P21439 1286 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 DLG4P78352 724 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 SPP2Q13103 211 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 HSP90B2PQ58FF3 399 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 KLHL7Q8IXQ5 586 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 DAW1Q8N136 415 aa13.62□□□□□ -0.23
HMGN1-220ENST00000492280 SEPT11Q9NVA2 429 aaKnown RBP13.62□□□□□ -0.23
HMGN1-220ENST00000492280 RBAK-RBAKDNI3L0D1 243 aa13.61□□□□□ -0.23
HMGN1-220ENST00000492280 GLI1P08151 1106 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms