RNA–Protein interactions for RNA: ENST00000492270.1

UPF3A-209, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2 BASIC

Gene UPF3A, Length 494 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-209ENST00000492270 KIF28PB7ZC32 967 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 OATP04181 439 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 HAS1Q92839 578 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 APBB2Q92870 758 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 AGO3Q9H9G7 860 aaKnown RBP27.82■■■□□ 2.04
UPF3A-209ENST00000492270 CERS4Q9HA82 394 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 VAV3Q9UKW4 847 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 NLRC5Q86WI3 1866 aa27.82■■■□□ 2.04
UPF3A-209ENST00000492270 ARID2Q68CP9 1835 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 EML1O00423 815 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 WNT7AO00755 349 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 AMHP03971 560 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 RPLP2P05387 115 aaKnown RBP27.81■■■□□ 2.04
UPF3A-209ENST00000492270 IER5Q5VY09 327 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 KIAA0319LQ8IZA0 1049 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 RDM1Q8NG50 284 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 FAM167AQ96KS9 214 aa27.81■■■□□ 2.04
UPF3A-209ENST00000492270 UPF2Q9HAU5 1272 aaKnown RBP27.81■■■□□ 2.04
UPF3A-209ENST00000492270 CD2BP2O95400 341 aaKnown RBP27.8■■■□□ 2.04
UPF3A-209ENST00000492270 CD52P31358 61 aa27.8■■■□□ 2.04
UPF3A-209ENST00000492270 TAP1Q03518 808 aa27.8■■■□□ 2.04
UPF3A-209ENST00000492270 TSHZ1Q6ZSZ6 1077 aa27.8■■■□□ 2.04
UPF3A-209ENST00000492270 MAFAQ8NHW3 353 aaPredicted RBP27.8■■■□□ 2.04
UPF3A-209ENST00000492270 CELF4Q9BZC1 486 aaKnown RBP27.8■■■□□ 2.04
UPF3A-209ENST00000492270 M0QZ92 97 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 ADGRE1Q14246 886 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 BANK1Q8NDB2 785 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 C8orf76Q96K31 380 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 FAM20AQ96MK3 541 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 PPP1R16BQ96T49 567 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 NAP1L4Q99733 375 aaKnown RBP27.79■■■□□ 2.04
UPF3A-209ENST00000492270 CDHR5Q9HBB8 845 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 PRUNE2Q8WUY3 3088 aa27.79■■■□□ 2.04
UPF3A-209ENST00000492270 TMEM150BA6NC51 233 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 PPP2R5CQ13362 524 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 NME8Q8N427 588 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 METTL13Q8N6R0 699 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 TBC1D32Q96NH3 1257 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 GAS2L1Q99501 681 aaPredicted RBP27.78■■■□□ 2.04
UPF3A-209ENST00000492270 RAD9AQ99638 391 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 CEP131Q9UPN4 1083 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 GINS2Q9Y248 185 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 TTC3P53804 2025 aa27.78■■■□□ 2.04
UPF3A-209ENST00000492270 KDM3AQ9Y4C1 1321 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 EPOPA6NHQ4 379 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 RFXAPO00287 272 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 TBX3O15119 743 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 UPP2O95045 317 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 STBD1O95210 358 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 CLCN3P51790 818 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 HMGN5P82970 282 aaKnown RBP27.77■■■□□ 2.04
UPF3A-209ENST00000492270 NRBP2Q9NSY0 501 aa27.77■■■□□ 2.04
UPF3A-209ENST00000492270 SEPT9Q9UHD8 586 aaPredicted RBP27.77■■■□□ 2.04
UPF3A-209ENST00000492270 ST18O60284 1047 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 VTNP04004 478 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 LRRC71Q8N4P6 559 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 LINC01465Q8N7H1 131 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 LINC01599Q8WXQ3 324 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 TOP1MTQ969P6 601 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 SH2D3AQ9BRG2 576 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 REV3LO60673 3130 aa27.76■■■□□ 2.03
UPF3A-209ENST00000492270 MARCH6O60337 910 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 SPIRE1Q08AE8 756 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 TMEM266Q2M3C6 531 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 TMEM40Q8WWA1 233 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 ARNTL2Q8WYA1 636 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 PADI3Q9ULW8 664 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 SQORQ9Y6N5 450 aa27.75■■■□□ 2.03
UPF3A-209ENST00000492270 RALGAPA2Q2PPJ7 1873 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 UNC80Q8N2C7 3258 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 LINC01553A4QN01 128 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 MAGEB2O15479 319 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 HTRA4P83105 476 aaPredicted RBP27.74■■■□□ 2.03
UPF3A-209ENST00000492270 SAFBQ15424 915 aaKnown RBP eCLIP27.74■■■□□ 2.03
UPF3A-209ENST00000492270 TARBP2Q15633 366 aaKnown RBP27.74■■■□□ 2.03
UPF3A-209ENST00000492270 KIZQ2M2Z5 673 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 MTERF2Q49AM1 385 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 XKR3Q5GH77 459 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 NCAPH2Q6IBW4 605 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 EFCAB12Q6NXP0 572 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 FAM184AQ8NB25 1140 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 COL4A6Q14031 1691 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 KIAA1671Q9BY89 1806 aa27.74■■■□□ 2.03
UPF3A-209ENST00000492270 ENPP3O14638 875 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 ATP2B1P20020 1258 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 IGFBP4P22692 258 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 PAK2Q13177 524 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 USP38Q8NB14 1042 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 SLC17A8Q8NDX2 589 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 FBXO18Q8NFZ0 1043 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 OSMRQ99650 979 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 WRAP73Q9P2S5 460 aaPredicted RBP27.73■■■□□ 2.03
UPF3A-209ENST00000492270 NOC2LQ9Y3T9 749 aaKnown RBP27.73■■■□□ 2.03
UPF3A-209ENST00000492270 INSL6Q9Y581 213 aa27.73■■■□□ 2.03
UPF3A-209ENST00000492270 PSMC5P62195 406 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 TBC1D8BQ0IIM8 1120 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 CALCRLQ16602 461 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 RTN4RL1Q86UN2 441 aaPredicted RBP27.72■■■□□ 2.03
UPF3A-209ENST00000492270 SLFN12Q8IYM2 578 aa27.72■■■□□ 2.03
UPF3A-209ENST00000492270 TMX3Q96JJ7 454 aa27.72■■■□□ 2.03
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms