RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 ZNF568Q3ZCX4 644 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 AGBL4Q5VU57 503 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 BRAPQ7Z569 592 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 GIMAP8Q8ND71 665 aaPredicted RBP4.81□□□□□ -1.64
CPSF3-205ENST00000489629 ZSWIM2Q8NEG5 633 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 EDAQ92838 391 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 SRPK1Q96SB4 655 aaKnown RBP4.81□□□□□ -1.64
CPSF3-205ENST00000489629 KIAA1683Q9H0B3 1180 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 OR10A5Q9H207 317 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 VPS11Q9H270 941 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 TRIM39Q9HCM9 518 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 KCNH7Q9NS40 1196 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 SFMBT1Q9UHJ3 866 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 ASB1Q9Y576 335 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 SLC30A1Q9Y6M5 507 aa4.81□□□□□ -1.64
CPSF3-205ENST00000489629 A0A0G2JNJ9 132 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 GOLGA6L22H0YM25 854 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 FOXP2O15409 715 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 ARHGAP6O43182 974 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 RAD17O75943 681 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 HMGCRP04035 888 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 ZBTB48P10074 688 aaPredicted RBP4.8□□□□□ -1.64
CPSF3-205ENST00000489629 PCOLCEQ15113 449 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 HS1BP3Q53T59 392 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 C2orf27AQ580R0 203 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 SOGA3Q5TF21 947 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 OTOP1Q7RTM1 612 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 LILRB2Q8N423 598 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 GBP4Q96PP9 640 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 DPYSL5Q9BPU6 564 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 Q9UFV3 132 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 SRRDQ9UH36 339 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 CDC42EP3Q9UKI2 254 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 NR2E1Q9Y466 385 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 PTCH2Q9Y6C5 1203 aa4.8□□□□□ -1.64
CPSF3-205ENST00000489629 SLC12A8A0AV02 714 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 PRAMEF22A3QJZ6 481 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 PLSCR1O15162 318 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 MAFO75444 373 aaPredicted RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 COMTP21964 271 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 MECP2P51608 486 aaKnown RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 MOGSQ13724 837 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 PRKD1Q15139 912 aaPredicted RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 TMEM177Q53S58 311 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 CATSPEREQ5SY80 951 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 MAMDC4Q6UXC1 1216 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 USP30Q70CQ3 517 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 BCL6BQ8N143 479 aaPredicted RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 FOXRED1Q96CU9 486 aaPredicted RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 SORCS2Q96PQ0 1159 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 ADOQ96SZ5 270 aa4.79□□□□□ -1.64
CPSF3-205ENST00000489629 NCOA5Q9HCD5 579 aaKnown RBP4.79□□□□□ -1.64
CPSF3-205ENST00000489629 CDC14BO60729 498 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 SLPIP03973 132 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 GRAMD4Q6IC98 578 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 OTOP2Q7RTS6 562 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 POLNQ7Z5Q5 900 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 FILIP1Q7Z7B0 1213 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 RTN4RL1Q86UN2 441 aaPredicted RBP4.78□□□□□ -1.64
CPSF3-205ENST00000489629 IGSF22Q8N9C0 903 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 PMFBP1Q8TBY8 1022 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 PLA2G12BQ9BX93 195 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 MSL2Q9HCI7 577 aa4.78□□□□□ -1.64
CPSF3-205ENST00000489629 CYR61O00622 381 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 PLD2O14939 933 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 FZD7O75084 574 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 ACO1P21399 889 aaKnown RBP4.77□□□□□ -1.65
CPSF3-205ENST00000489629 GDF5P43026 501 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 MRE11P49959 708 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 HGFACQ04756 655 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 FOXE3Q13461 319 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 TMEM132BQ14DG7 1078 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 MIIPQ5JXC2 388 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 CC2D1AQ6P1N0 951 aaPredicted RBP4.77□□□□□ -1.65
CPSF3-205ENST00000489629 RNF207Q6ZRF8 634 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 C2orf69Q8N8R5 385 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 HIPK4Q8NE63 616 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 ZNF503Q96F45 646 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 CLUHP3Q96NS8 147 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 OR14A2Q96R54 314 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 OR10A2Q9H208 303 aa4.77□□□□□ -1.65
CPSF3-205ENST00000489629 PUF60Q9UHX1 559 aaKnown RBP4.77□□□□□ -1.65
CPSF3-205ENST00000489629 PMS2P1A4D2B8 440 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 DVL2O14641 736 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 APPP05067 770 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 APEX1P27695 318 aaKnown RBP4.76□□□□□ -1.65
CPSF3-205ENST00000489629 RPS19P39019 145 aaKnown RBP4.76□□□□□ -1.65
CPSF3-205ENST00000489629 STAT5BP51692 787 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 IRF9Q00978 393 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 ALDH6A1Q02252 535 aaKnown RBP4.76□□□□□ -1.65
CPSF3-205ENST00000489629 FOXL1Q12952 345 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 SF3A1Q15459 793 aaKnown RBP4.76□□□□□ -1.65
CPSF3-205ENST00000489629 GPR135Q8IZ08 494 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 WDR48Q8TAF3 677 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 CALML6Q8TD86 181 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 BOCQ9BWV1 1114 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 OSBPL2Q9H1P3 480 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 PCED1AQ9H1Q7 454 aa4.76□□□□□ -1.65
CPSF3-205ENST00000489629 C12orf65Q9H3J6 166 aaKnown RBP4.76□□□□□ -1.65
CPSF3-205ENST00000489629 CDK11AQ9UQ88 783 aaPredicted RBP4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms