RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 RTKN2Q8IZC4 609 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 ANKRD35Q8N283 1001 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 SHCBP1Q8NEM2 672 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 OSBP2Q969R2 916 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 Q9UFV3 132 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 ATP23Q9Y6H3 246 aa5.6□□□□□ -1.51
SMC4-220ENST00000488017 WNT9AO14904 365 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 LAIR1Q6GTX8 287 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 NSMFQ6X4W1 530 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 ARHGAP36Q6ZRI8 547 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 WDR48Q8TAF3 677 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 ARHGEF4Q9NR80 690 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 BTBD7Q9P203 1132 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 HECAQ9UBI9 543 aaPredicted RBP5.59□□□□□ -1.51
SMC4-220ENST00000488017 CDC42EP3Q9UKI2 254 aa5.59□□□□□ -1.51
SMC4-220ENST00000488017 BMP5P22003 454 aa5.58□□□□□ -1.52
SMC4-220ENST00000488017 ADRA1BP35368 520 aa5.58□□□□□ -1.52
SMC4-220ENST00000488017 IFRD2Q12894 506 aaPredicted RBP5.58□□□□□ -1.52
SMC4-220ENST00000488017 OR14K1Q8NGZ2 314 aa5.58□□□□□ -1.52
SMC4-220ENST00000488017 AGO3Q9H9G7 860 aaKnown RBP5.58□□□□□ -1.52
SMC4-220ENST00000488017 MAN2B1O00754 1011 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 ECE1P42892 770 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 CD83Q01151 205 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 PAK1Q13153 545 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 KANK2Q63ZY3 851 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 ZNF662Q6ZS27 426 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 EP400NLQ6ZTU2 488 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 GLCCI1Q86VQ1 547 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 RPUSD2Q8IZ73 545 aaKnown RBP5.57□□□□□ -1.52
SMC4-220ENST00000488017 TMEM176AQ96HP8 235 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 OR10A5Q9H207 317 aa5.57□□□□□ -1.52
SMC4-220ENST00000488017 TRAV20A0A0B4J274 112 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 MPIG6BO95866 241 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 C4BPAP04003 597 aaKnown RBP5.56□□□□□ -1.52
SMC4-220ENST00000488017 MC4RP32245 332 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 PTGS2P35354 604 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 ZC3H6P61129 1189 aaKnown RBP5.56□□□□□ -1.52
SMC4-220ENST00000488017 SLC25A3Q00325 362 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 RIN1Q13671 783 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 RABGGTAQ92696 567 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 LPPQ93052 612 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 FBXW5Q969U6 566 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 AMNQ9BXJ7 453 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 GPRC5BQ9NZH0 403 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 ASXL2Q76L83 1435 aa5.56□□□□□ -1.52
SMC4-220ENST00000488017 BLACEA4D250 179 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 TRAF5O00463 557 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 AQP7O14520 342 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 CLASP2O75122 1294 aaKnown RBP5.55□□□□□ -1.52
SMC4-220ENST00000488017 RHOBTB3O94955 611 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 AMY2AP04746 511 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 AMY2BP19961 511 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 MOGSQ13724 837 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 GRAMD4Q6IC98 578 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 PTRH1Q86Y79 214 aaKnown RBP5.55□□□□□ -1.52
SMC4-220ENST00000488017 MIEF2Q96C03 454 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 MRRFQ96E11 262 aaKnown RBP5.55□□□□□ -1.52
SMC4-220ENST00000488017 FAM184BQ9ULE4 1060 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 SH3BP1Q9Y3L3 701 aa5.55□□□□□ -1.52
SMC4-220ENST00000488017 R3HCC1Q9Y3T6 440 aaKnown RBP5.55□□□□□ -1.52
SMC4-220ENST00000488017 PRAMEF25A6NGN4 478 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 MAFO75444 373 aaPredicted RBP5.54□□□□□ -1.52
SMC4-220ENST00000488017 CNGB1Q14028 1251 aaPredicted RBP5.54□□□□□ -1.52
SMC4-220ENST00000488017 DDR2Q16832 855 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 C16orf59Q7L2K0 433 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 BHLHA9Q7RTU4 235 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 ST13P5Q8NFI4 369 aaPredicted RBP5.54□□□□□ -1.52
SMC4-220ENST00000488017 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.54□□□□□ -1.525e-7■□□□□ 10.6
SMC4-220ENST00000488017 ZNF408Q9H9D4 720 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 CATSPERZQ9NTU4 200 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 VWA7Q9Y334 891 aa5.54□□□□□ -1.52
SMC4-220ENST00000488017 A0A1W2PRX2 142 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 GCP02774 474 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 MAN2A2P49641 1150 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 SCNN1GP51170 649 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 MFAP1P55081 439 aaKnown RBP5.53□□□□□ -1.52
SMC4-220ENST00000488017 FSTL1Q12841 308 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 LRSAM1Q6UWE0 723 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 MAMDC2Q7Z304 686 aaPredicted RBP5.53□□□□□ -1.52
SMC4-220ENST00000488017 MRGPREQ86SM8 312 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 OSTM1Q86WC4 334 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 LRRC47Q8N1G4 583 aaKnown RBP5.53□□□□□ -1.52
SMC4-220ENST00000488017 HAS1Q92839 578 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 NRDE2Q9H7Z3 1164 aa5.53□□□□□ -1.52
SMC4-220ENST00000488017 CTDP1Q9Y5B0 961 aaPredicted RBP5.53□□□□□ -1.52
SMC4-220ENST00000488017 ZNF561-AS1K7EIQ3 104 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 GSTA4O15217 222 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 LMNAP02545 664 aaKnown RBP5.52□□□□□ -1.53
SMC4-220ENST00000488017 NAT1P18440 290 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 PROZP22891 400 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 STAT5BP51692 787 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 GNL2Q13823 731 aaKnown RBP5.52□□□□□ -1.53
SMC4-220ENST00000488017 TOB2Q14106 344 aaPredicted RBP5.52□□□□□ -1.53
SMC4-220ENST00000488017 CRY1Q16526 586 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 Q6ZRM9 215 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 MTDHQ86UE4 582 aaKnown RBP5.52□□□□□ -1.53
SMC4-220ENST00000488017 CELF2-AS1Q8N7Q2 184 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 PCDH19Q8TAB3 1148 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 LENG9Q96B70 501 aa5.52□□□□□ -1.53
SMC4-220ENST00000488017 ST7Q9NRC1 585 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms