RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 KRT14P02533 472 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 EPB41P11171 864 aaKnown RBP19.64■□□□□ 0.73
VIM-206ENST00000487938 NMT1P30419 496 aaKnown RBP19.64■□□□□ 0.73
VIM-206ENST00000487938 DACT2Q5SW24 774 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 KCTD16Q68DU8 428 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 RINT1Q6NUQ1 792 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 GBP6Q6ZN66 633 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 KSR1Q8IVT5 923 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 TPH2Q8IWU9 490 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 USP38Q8NB14 1042 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 SIX2Q9NPC8 291 aa19.64■□□□□ 0.73
VIM-206ENST00000487938 SMCHD1A6NHR9 2005 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 FAM170AA1A519 330 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 SHOX2O60902 331 aaPredicted RBP19.63■□□□□ 0.73
VIM-206ENST00000487938 EYA4O95677 639 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 PPFIA1Q13136 1202 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 ZC2HC1CQ53FD0 456 aaPredicted RBP19.63■□□□□ 0.73
VIM-206ENST00000487938 GMCL1P1Q8NEA9 526 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 SLC35C1Q96A29 364 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 MASTLQ96GX5 879 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 GMCL1Q96IK5 515 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 CAPS2Q9BXY5 557 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 GCNT4Q9P109 453 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 ECE2O60344 883 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 RPL13P26373 211 aaKnown RBP19.63■□□□□ 0.73
VIM-206ENST00000487938 CIITAP33076 1130 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 PDE6BP35913 854 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 MMP14P50281 582 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 UBXN2AP68543 259 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 C10orf76Q5T2E6 689 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 STRIP1Q5VSL9 837 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 MCTP2Q6DN12 878 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 MYCT1Q8N699 235 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 AKT1S1Q96B36 256 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 TMEM51Q9NW97 253 aa19.63■□□□□ 0.73
VIM-206ENST00000487938 BZW2Q9Y6E2 419 aaKnown RBP19.63■□□□□ 0.73
VIM-206ENST00000487938 TGFB1I1O43294 461 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 CEP104O60308 925 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 KIF4AO95239 1232 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 PAK2Q13177 524 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 RBM26Q5T8P6 1007 aaKnown RBP19.62■□□□□ 0.73
VIM-206ENST00000487938 SH2D3CQ8N5H7 860 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 DYDC2Q96IM9 177 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 POLR3CQ9BUI4 534 aaPredicted RBP19.62■□□□□ 0.73
VIM-206ENST00000487938 METTL14Q9HCE5 456 aaKnown RBP19.62■□□□□ 0.73
VIM-206ENST00000487938 PRR12Q9ULL5 1215 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 CFBP00751 764 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 MMP10P09238 476 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 COG2Q14746 738 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 CFAP58Q5T655 872 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 RASSF4Q9H2L5 321 aa19.62■□□□□ 0.73
VIM-206ENST00000487938 BTNL10A8MVZ5 291 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 GFPT2O94808 682 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 SLITRK3O94933 977 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 GNGT1P63211 74 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 NNTQ13423 1086 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 BMT2Q1RMZ1 405 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 MSL1Q68DK7 614 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 WDR18Q9BV38 432 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 MRIQ9BWK5 157 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 AP1M1Q9BXS5 423 aa19.61■□□□□ 0.73
VIM-206ENST00000487938 IGLV3-22A0A075B6J6 115 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 TMCO5BA8MYB1 307 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 PLSCR1O15162 318 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 FAM13AO94988 1023 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 ECE1P42892 770 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 JAM2P57087 298 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 OTOP1Q7RTM1 612 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 IQCKQ8N0W5 287 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 LRRC57Q8N9N7 239 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 TPCN2Q8NHX9 752 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 HSD17B14Q9BPX1 270 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 TMEM59LQ9UK28 342 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 NRXN2Q9P2S2 1712 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 ZNF233A6NK53 670 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 FLOT1O75955 427 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 PRKCIP41743 596 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 TNNC1P63316 161 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 KIAA1755Q5JYT7 1200 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 SAMD1Q6SPF0 538 aaPredicted RBP19.6■□□□□ 0.73
VIM-206ENST00000487938 U2AF1L4Q8WU68 220 aaKnown RBP19.6■□□□□ 0.73
VIM-206ENST00000487938 PIK3R5Q8WYR1 880 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 TSPYL1Q9H0U9 437 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 STK24Q9Y6E0 443 aa19.6■□□□□ 0.73
VIM-206ENST00000487938 DDX3XO00571 662 aaKnown RBP eCLIP19.59■□□□□ 0.738e-32■■■□□ 14.7
VIM-206ENST00000487938 SLC16A3O15427 465 aaKnown RBP19.59■□□□□ 0.73
VIM-206ENST00000487938 APBA3O96018 575 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 CYP3A4P08684 503 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 ATP1A2P50993 1020 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 CCDC174Q6PII3 467 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 FAM186BQ8IYM0 893 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 METTL13Q8N6R0 699 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 CCT5P48643 541 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 LRCH2Q5VUJ6 765 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 BTNL9Q6UXG8 535 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 C1orf186Q6ZWK4 172 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 FLAD1Q8NFF5 587 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 BORCS6Q96GS4 357 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 PBKQ96KB5 322 aa19.59■□□□□ 0.73
VIM-206ENST00000487938 PRMT6Q96LA8 375 aaPredicted RBP19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms