RNA–Protein interactions for RNA: ENST00000487617.5

HDAC4-209, Transcript of histone deacetylase 4, humanhuman

TSL 3

Gene HDAC4, Length 819 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-209ENST00000487617 KRT40Q6A162 431 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 B3GNT9Q6UX72 402 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 KIAA0319LQ8IZA0 1049 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 METTL13Q8N6R0 699 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 USP38Q8NB14 1042 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 TNFRSF25Q93038 417 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 TOP1MTQ969P6 601 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 FAM20AQ96MK3 541 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 AGO3Q9H9G7 860 aaKnown RBP23.03■■□□□ 1.28
HDAC4-209ENST00000487617 INSL6Q9Y581 213 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 SQORQ9Y6N5 450 aa23.03■■□□□ 1.28
HDAC4-209ENST00000487617 RFXAPO00287 272 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 MARCH6O60337 910 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 DIS3L2Q8IYB7 885 aaKnown RBP23.02■■□□□ 1.28
HDAC4-209ENST00000487617 LLPHQ9BRT6 129 aaKnown RBP23.02■■□□□ 1.28
HDAC4-209ENST00000487617 KCNMB3Q9NPA1 279 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 GINS2Q9Y248 185 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 CDH23Q9H251 3354 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 PTPRSQ13332 1948 aa23.02■■□□□ 1.28
HDAC4-209ENST00000487617 EPOPA6NHQ4 379 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 BTBD18B2RXH4 712 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 MAGEB2O15479 319 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 SPRED2Q7Z698 418 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 PPM1EQ8WY54 764 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 YME1L1Q96TA2 773 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 UPF2Q9HAU5 1272 aaKnown RBP23.01■■□□□ 1.27
HDAC4-209ENST00000487617 SH2B1Q9NRF2 756 aaPredicted RBP23.01■■□□□ 1.27
HDAC4-209ENST00000487617 KDM3AQ9Y4C1 1321 aa23.01■■□□□ 1.27
HDAC4-209ENST00000487617 MICAL3Q7RTP6 2002 aa23■■□□□ 1.27
HDAC4-209ENST00000487617 HTRA4P83105 476 aaPredicted RBP23■■□□□ 1.27
HDAC4-209ENST00000487617 PAK2Q13177 524 aa23■■□□□ 1.27
HDAC4-209ENST00000487617 POTEDQ86YR6 584 aa23■■□□□ 1.27
HDAC4-209ENST00000487617 PHF6Q8IWS0 365 aaKnown RBP eCLIP23■■□□□ 1.27
HDAC4-209ENST00000487617 PADI3Q9ULW8 664 aa23■■□□□ 1.27
HDAC4-209ENST00000487617 MYO9BQ13459 2157 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 LINC01553A4QN01 128 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 ENPP3O14638 875 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 TBX3O15119 743 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 CLCN3P51790 818 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 GUCY1B3Q02153 619 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 PPP2R5CQ13362 524 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 RABEP1Q15276 862 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 EFCAB12Q6NXP0 572 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 BANK1Q8NDB2 785 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 HAS1Q92839 578 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 TGS1Q96RS0 853 aaKnown RBP22.99■■□□□ 1.27
HDAC4-209ENST00000487617 PPP1R16BQ96T49 567 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 CDHR5Q9HBB8 845 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 SEPT9Q9UHD8 586 aaPredicted RBP22.99■■□□□ 1.27
HDAC4-209ENST00000487617 VAV3Q9UKW4 847 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 MTUS1Q9ULD2 1270 aa22.99■■□□□ 1.27
HDAC4-209ENST00000487617 CHD9Q3L8U1 2897 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 EML1O00423 815 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 BAG4O95429 457 aaKnown RBP22.98■■□□□ 1.27
HDAC4-209ENST00000487617 VTNP04004 478 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 TMOD1P28289 359 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 SAFBQ15424 915 aaKnown RBP eCLIP22.98■■□□□ 1.27
HDAC4-209ENST00000487617 CCDC85BQ15834 202 aaPredicted RBP22.98■■□□□ 1.27
HDAC4-209ENST00000487617 KIZQ2M2Z5 673 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 TMEM266Q2M3C6 531 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 XKR3Q5GH77 459 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 MICALL1Q8N3F8 863 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 C8orf76Q96K31 380 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 MAP7D2Q96T17 732 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 FTHL17Q9BXU8 183 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 AKT3Q9Y243 479 aa22.98■■□□□ 1.27
HDAC4-209ENST00000487617 SIP14410 1827 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 GTPBP6O43824 516 aaPredicted RBP22.97■■□□□ 1.27
HDAC4-209ENST00000487617 ERVK-21P61565 698 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 PSMC5P62195 406 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 HMGN5P82970 282 aaKnown RBP22.97■■□□□ 1.27
HDAC4-209ENST00000487617 TBC1D8BQ0IIM8 1120 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 NFX1Q12986 1120 aaKnown RBP22.97■■□□□ 1.27
HDAC4-209ENST00000487617 SLFN12Q8IYM2 578 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 LRRC71Q8N4P6 559 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 SP7Q8TDD2 431 aaPredicted RBP22.97■■□□□ 1.27
HDAC4-209ENST00000487617 SUGCTQ9HAC7 445 aa22.97■■□□□ 1.27
HDAC4-209ENST00000487617 MYH9P35579 1960 aaKnown RBP22.97■■□□□ 1.27
HDAC4-209ENST00000487617 DDX11L8A8MPP1 907 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 GPR32O75388 356 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 RPS6KA5O75582 802 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 STBD1O95210 358 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 CRYBB1P53674 252 aaPredicted RBP22.96■■□□□ 1.27
HDAC4-209ENST00000487617 TARBP2Q15633 366 aaKnown RBP22.96■■□□□ 1.27
HDAC4-209ENST00000487617 MTERF2Q49AM1 385 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 FAM184AQ8NB25 1140 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 TMEM40Q8WWA1 233 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 LINC01599Q8WXQ3 324 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 OSMRQ99650 979 aa22.96■■□□□ 1.27
HDAC4-209ENST00000487617 NIFKQ9BYG3 293 aaKnown RBP22.96■■□□□ 1.27
HDAC4-209ENST00000487617 NOC2LQ9Y3T9 749 aaKnown RBP22.96■■□□□ 1.27
HDAC4-209ENST00000487617 TMEM150BA6NC51 233 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 ST18O60284 1047 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 QARSP47897 775 aaKnown RBP22.95■■□□□ 1.26
HDAC4-209ENST00000487617 GRB10Q13322 594 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 ODR4Q5SWX8 454 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 RTN4RL1Q86UN2 441 aaPredicted RBP22.95■■□□□ 1.26
HDAC4-209ENST00000487617 LINC01465Q8N7H1 131 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 ERVK-5Q9HDB9 667 aa22.95■■□□□ 1.26
HDAC4-209ENST00000487617 MTCH2Q9Y6C9 303 aa22.95■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms