RNA–Protein interactions for RNA: ENST00000485842.5

HPS4-214, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 973 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-214ENST00000485842 TBC1D8BQ0IIM8 1120 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 IL17AQ16552 155 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 HAUS3Q68CZ6 603 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 ANO5Q75V66 913 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 DEFB128Q7Z7B8 93 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 RSPH3Q86UC2 560 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 C4orf19Q8IY42 314 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 METTL13Q8N6R0 699 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 SNX29Q8TEQ0 813 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 CCDC43Q96MW1 224 aaKnown RBP13.26□□□□□ -0.29
HPS4-214ENST00000485842 USP28Q96RU2 1077 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 DAXXQ9UER7 740 aaPredicted RBP13.26□□□□□ -0.29
HPS4-214ENST00000485842 COLQQ9Y215 455 aaPredicted RBP13.26□□□□□ -0.29
HPS4-214ENST00000485842 PCDHA2Q9Y5H9 948 aa13.26□□□□□ -0.29
HPS4-214ENST00000485842 SIP14410 1827 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 SMIM35A0A1B0GVV1 85 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 RSPH10B2B2RC85 870 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 ZBTB39O15060 712 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 RSPH10BP0C881 870 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 MARCKSP29966 332 aaPredicted RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 YWHABP31946 246 aaKnown RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 CLCN3P51790 818 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 NPEPPSP55786 919 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 TMEM62Q0P6H9 643 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 XKR9Q5GH70 373 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 ARL6IP4Q66PJ3 421 aaKnown RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 POTEGQ6S5H5 508 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 CATSPER3Q86XQ3 398 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 IGSF22Q8N9C0 903 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 CEP170P1Q96L14 293 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 ZNF396Q96N95 335 aaPredicted RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 HSD17B14Q9BPX1 270 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 NIFKQ9BYG3 293 aaKnown RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 TUFT1Q9NNX1 390 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 IL23AQ9NPF7 189 aa13.25□□□□□ -0.29
HPS4-214ENST00000485842 BMP2KQ9NSY1 1161 aaPredicted RBP13.25□□□□□ -0.29
HPS4-214ENST00000485842 A0A087WWV3 80 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 MAGEB2O15479 319 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 CAND2O75155 1236 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 LYPLA2O95372 231 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 SPATA31C1P0DKV0 1188 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 CDC25AP30304 524 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 RFC2P35250 354 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 MRPS6P82932 125 aaKnown RBP13.24□□□□□ -0.29
HPS4-214ENST00000485842 PDIA5Q14554 519 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 PTPAQ15257 358 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 TARBP2Q15633 366 aaKnown RBP13.24□□□□□ -0.29
HPS4-214ENST00000485842 ZRSR1Q15695 479 aaKnown RBP13.24□□□□□ -0.29
HPS4-214ENST00000485842 EFCAB12Q6NXP0 572 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 TRAF7Q6Q0C0 670 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 OTUD6AQ7L8S5 288 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 LRRC71Q8N4P6 559 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 PIGOQ8TEQ8 1089 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 MAP7D2Q96T17 732 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 PPP1R16BQ96T49 567 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 POLR3CQ9BUI4 534 aaPredicted RBP13.24□□□□□ -0.29
HPS4-214ENST00000485842 SUGCTQ9HAC7 445 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 CYP26B1Q9NR63 512 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 TFIP11Q9UBB9 837 aaKnown RBP13.24□□□□□ -0.29
HPS4-214ENST00000485842 CDY2AQ9Y6F7 541 aa13.24□□□□□ -0.29
HPS4-214ENST00000485842 M0QZ92 97 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 BRD1O95696 1058 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 VTNP04004 478 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 RPA1P27694 616 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 BMP8BP34820 402 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 POLGP54098 1239 aaPredicted RBP13.23□□□□□ -0.29
HPS4-214ENST00000485842 GRIN1Q05586 938 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 MBTPS1Q14703 1052 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 STK38Q15208 465 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 C9orf50Q5SZB4 431 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 KRT79Q5XKE5 535 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 PSRC1Q6PGN9 363 aaPredicted RBP13.23□□□□□ -0.29
HPS4-214ENST00000485842 ZNF365Q70YC5 407 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 RPUSD2Q8IZ73 545 aaKnown RBP13.23□□□□□ -0.29
HPS4-214ENST00000485842 ZNF579Q8NAF0 562 aaKnown RBP13.23□□□□□ -0.29
HPS4-214ENST00000485842 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.23□□□□□ -0.291e-9■■■□□ 15.4
HPS4-214ENST00000485842 PRO3102Q9H379 93 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 AKT3Q9Y243 479 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 GINS2Q9Y248 185 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 ZDHHC9Q9Y397 364 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 TRPV2Q9Y5S1 764 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 STK24Q9Y6E0 443 aa13.23□□□□□ -0.29
HPS4-214ENST00000485842 TET1Q8NFU7 2136 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 LOXHD1Q8IVV2 1947 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 NBNO60934 754 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 PARNO95453 639 aaKnown RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 CHRNA1P02708 482 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 RPLP2P05387 115 aaKnown RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 GHRP10912 638 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 TMOD1P28289 359 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 NASPP49321 788 aaPredicted RBP13.22□□□□□ -0.29
HPS4-214ENST00000485842 SHHQ15465 462 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 ECM1Q16610 540 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 TMEM240Q5SV17 173 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 IER5Q5VY09 327 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 C16orf59Q7L2K0 433 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 RPAINQ86UA6 219 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 KIAA0319LQ8IZA0 1049 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 TDHQ8IZJ6 230 aa13.22□□□□□ -0.29
HPS4-214ENST00000485842 SLC7A3Q8WY07 619 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms