RNA–Protein interactions for RNA: ENST00000485412.1

SQSTM1-208, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 656 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-208ENST00000485412 NFASCO94856 1347 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 MGEA5O60502 916 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 PPFIA3O75145 1194 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 SCG2P13521 617 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 CDC27P30260 824 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 RTN1Q16799 776 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 CEP55Q53EZ4 464 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 SPOUT1Q5T280 376 aaKnown RBP15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 MICAL1Q8TDZ2 1067 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 TMEM40Q8WWA1 233 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 RPGRIP1Q96KN7 1286 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 PHF7Q9BWX1 381 aaPredicted RBP15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 TLE6Q9H808 572 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 PCDHA2Q9Y5H9 948 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 SQORQ9Y6N5 450 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 ZDBF2Q9HCK1 2354 aa15.79■□□□□ 0.12
SQSTM1-208ENST00000485412 ZBTB42B2RXF5 422 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 FAM86B1E9PN63 330 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 MEIS1O00470 390 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 MAFGO15525 162 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 ST18O60284 1047 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 ATG7O95352 703 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 GLP2RO95838 553 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 FAM86B2P0C5J1 330 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 CPA1P15085 419 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 CLK2P49760 499 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 STAT5BP51692 787 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 ADCY7P51828 1080 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 SIGLEC14Q08ET2 396 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 CBX2Q14781 532 aaPredicted RBP15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 MTHFD1LQ6UB35 978 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 CCDC60Q8IWA6 550 aaPredicted RBP15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 TNPO1Q92973 898 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 NEK1Q96PY6 1258 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 PPP1R16BQ96T49 567 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 SDF4Q9BRK5 362 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 CELF4Q9BZC1 486 aaKnown RBP15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 AZI2Q9H6S1 392 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 PCDHB12Q9Y5F1 795 aa15.78■□□□□ 0.12
SQSTM1-208ENST00000485412 IGKV6D-21A0A0A0MT36 114 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 SMCO2A6NFE2 343 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 ZBTB43O43298 467 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 ATP4AP20648 1035 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 SREBF1P36956 1147 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 TCF15Q12870 199 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 JAKMIP3Q5VZ66 844 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 PLPPR4Q7Z2D5 763 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 AAASQ9NRG9 546 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 GINS2Q9Y248 185 aa15.77■□□□□ 0.12
SQSTM1-208ENST00000485412 IGLV3-22A0A075B6J6 115 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 KLF18A0A0U1RQI7 1052 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 SMIM35A0A1B0GVV1 85 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 FSD2A1L4K1 749 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 GOLGA8AA7E2F4 631 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 GOLGA8BA8MQT2 603 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 PER2O15055 1255 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 DHX15O43143 795 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 KLRC1P26715 233 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 RBM10P98175 930 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 KRT76Q01546 638 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 UBE3AQ05086 875 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 PPP1R18Q6NYC8 613 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 ABHD15Q6UXT9 468 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 KIAA0319LQ8IZA0 1049 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 CRYGNQ8WXF5 182 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 ERVK-5Q9HDB9 667 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 TLR9Q9NR96 1032 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 FAM86C1Q9NVL1 165 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 RBM28Q9NW13 759 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 BARHL2Q9NY43 387 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 NOC2LQ9Y3T9 749 aaKnown RBP15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 PCDHB7Q9Y5E2 793 aa15.76■□□□□ 0.11
SQSTM1-208ENST00000485412 KDM3AQ9Y4C1 1321 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 GFRA3O60609 400 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 SRGAP2BP0DMP2 458 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 ATF7P17544 494 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 ADD1P35611 737 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 SARSP49591 514 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 NFX1Q12986 1120 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 SYNE3Q6ZMZ3 975 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 DHX32Q7L7V1 743 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 TRMT1LQ7Z2T5 733 aaKnown RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 ZBTB33Q86T24 672 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 PLA2G4DQ86XP0 818 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 CDCA3Q99618 268 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 IRF2BPLQ9H1B7 796 aa15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 RNF216Q9NWF9 866 aaPredicted RBP15.75■□□□□ 0.11
SQSTM1-208ENST00000485412 USP34Q70CQ2 3546 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 TBKBP1A7MCY6 615 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 BACH1O14867 736 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 FOSP01100 380 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 VCPP55072 806 aaKnown RBP15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 BMP2KLQ5H9B9 411 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 FAM102BQ5T8I3 360 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 THNSL1Q8IYQ7 743 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 NME8Q8N427 588 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 RASGRP4Q8TDF6 673 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 ATP8B4Q8TF62 1192 aa15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 ATOH1Q92858 354 aaPredicted RBP15.74■□□□□ 0.11
SQSTM1-208ENST00000485412 DENND3A2RUS2 1198 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms