RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 ANKS3Q6ZW76 656 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 CLIP3Q96DZ5 547 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 ALG1Q9BT22 464 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 GPRC5BQ9NZH0 403 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 FBXO10Q9UK96 956 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 ATP23Q9Y6H3 246 aa5.62□□□□□ -1.51
CCDC88A-212ENST00000474059 PMS2P1A4D2B8 440 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 RASSF10A6NK89 507 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 ERCC5P28715 1186 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 STAT5BP51692 787 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 HERVK_113P62684 666 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 PAK1Q13153 545 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 GRM7Q14831 915 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 MRGPRGQ86SM5 289 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 VPS37DQ86XT2 251 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 NLGN4XQ8N0W4 816 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 ST13P5Q8NFI4 369 aaPredicted RBP5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 PCDHA8Q9Y5H6 950 aa5.61□□□□□ -1.51
CCDC88A-212ENST00000474059 A0A0G2JNJ9 132 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 SLC26A4O43511 780 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 MMEP08473 750 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 DNAJA1P31689 397 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 ECE1P42892 770 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 ADAM8P78325 824 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 MOGSQ13724 837 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 RRP1BQ14684 758 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 ADGRE4PQ86SQ3 457 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 NOSTRINQ8IVI9 506 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 DNAJC10Q8IXB1 793 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 ULK2Q8IYT8 1036 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 RPUSD2Q8IZ73 545 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 SHCBP1Q8NEM2 672 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 TMEM176AQ96HP8 235 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 NELFAQ9H3P2 528 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 UCKL1Q9NWZ5 548 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 Q9UFV3 132 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 GIT1Q9Y2X7 761 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 SH3BP1Q9Y3L3 701 aa5.6□□□□□ -1.51
CCDC88A-212ENST00000474059 IQCA1LA6NCM1 817 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 PRAMEF25A6NGN4 478 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 CLASP2O75122 1294 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 KRT15P19012 456 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 MAKP20794 623 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 STAT3P40763 770 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 SCNN1GP51170 649 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 ST5P78524 1137 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 SPATC1Q76KD6 591 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 D2HGDHQ8N465 521 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 ASB15Q8WXK1 588 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 FBXW5Q969U6 566 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 OR10A5Q9H207 317 aa5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 AURKAIP1Q9NWT8 199 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-212ENST00000474059 CAPN14A8MX76 684 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 PROZP22891 400 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 RIN1Q13671 783 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 ACAP1Q15027 740 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 Q6ZRM9 215 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 C16orf59Q7L2K0 433 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 OTOP2Q7RTS6 562 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 MAMDC2Q7Z304 686 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 ZG16BQ96DA0 208 aa5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 CTDP1Q9Y5B0 961 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-212ENST00000474059 FOXN1O15353 648 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 LACTBP83111 547 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 ARID5AQ03989 594 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 SGMS1Q86VZ5 419 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 LRRC47Q8N1G4 583 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 GMLQ99445 158 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 SPATA9Q9BWV2 254 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 CATSPERZQ9NTU4 200 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 MSRB2Q9Y3D2 182 aa5.57□□□□□ -1.52
CCDC88A-212ENST00000474059 ZBTB7CA1YPR0 619 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 AQP7O14520 342 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 MAFO75444 373 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 TOB2Q14106 344 aaPredicted RBP5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 FAM209AQ5JX71 171 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 GRAMD4Q6IC98 578 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 MTDHQ86UE4 582 aaKnown RBP5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 RTKN2Q8IZC4 609 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 PTPRN2Q92932 1015 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 VOPP1Q96AW1 172 aa5.56□□□□□ -1.52
CCDC88A-212ENST00000474059 CCDC66A2RUB6 948 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 PEX11BO96011 259 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 SRGAP2CP0DJJ0 459 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 MEOX1P50221 254 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 RAB33AQ14088 237 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 ZNF669Q96BR6 464 aaPredicted RBP5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 EXOC2Q96KP1 924 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 GPHA2Q96T91 129 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 PRRX2Q99811 253 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 TTPALQ9BTX7 342 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 WDR26Q9H7D7 661 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 PCDHA9Q9Y5H5 950 aa5.55□□□□□ -1.52
CCDC88A-212ENST00000474059 ADRA1BP35368 520 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 IL12RB1P42701 662 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 ADCY7P51828 1080 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 GUCY1A3Q02108 690 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 ADAM15Q13444 863 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 C1QL3Q5VWW1 255 aa5.54□□□□□ -1.52
CCDC88A-212ENST00000474059 RHOUQ7L0Q8 258 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms