RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 NFX1Q12986 1120 aaKnown RBP22.4■■□□□ 1.18
COL9A3-210ENST00000472880 PAN2Q504Q3 1202 aaKnown RBP22.4■■□□□ 1.18
COL9A3-210ENST00000472880 RASGRP4Q8TDF6 673 aa22.4■■□□□ 1.18
COL9A3-210ENST00000472880 CLDND1Q9NY35 253 aa22.4■■□□□ 1.18
COL9A3-210ENST00000472880 MRPL42Q9Y6G3 142 aaKnown RBP22.4■■□□□ 1.18
COL9A3-210ENST00000472880 KIAA1671Q9BY89 1806 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 GRXCR2A6NFK2 248 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 NCK2O43639 380 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 RPS6KA5O75582 802 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 CSPG5O95196 566 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 MMP1P03956 469 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 IBSPP21815 317 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-210ENST00000472880 COL19A1Q14993 1142 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 NTRK3Q16288 839 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 ODR4Q5SWX8 454 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 FAM178BQ8IXR5 827 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 KIAA0319LQ8IZA0 1049 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 CRIPAKQ8N1N5 446 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 BBXQ8WY36 941 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-210ENST00000472880 TMX1Q9H3N1 280 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 RAPGEFL1Q9UHV5 662 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 FAM50BQ9Y247 325 aa22.39■■□□□ 1.17
COL9A3-210ENST00000472880 MAFBQ9Y5Q3 323 aaPredicted RBP22.39■■□□□ 1.17
COL9A3-210ENST00000472880 C22orf31O95567 290 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 IFNAR1P17181 557 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 ATP4AP20648 1035 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 SSTR3P32745 418 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 CIITAP33076 1130 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 CCT2P78371 535 aaKnown RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 FAM43BQ6ZT52 329 aaPredicted RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 TRMT1LQ7Z2T5 733 aaKnown RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 P2RX5Q93086 422 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 NCOA5Q9HCD5 579 aaKnown RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 ERVK-5Q9HDB9 667 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 CD320Q9NPF0 282 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 VPS54Q9P1Q0 977 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 CEP131Q9UPN4 1083 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 NOC2LQ9Y3T9 749 aaKnown RBP22.38■■□□□ 1.17
COL9A3-210ENST00000472880 SAMM50Q9Y512 469 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 PCDHA10Q9Y5I2 948 aa22.38■■□□□ 1.17
COL9A3-210ENST00000472880 DENND3A2RUS2 1198 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 ZBTB42B2RXF5 422 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 PDIA3P30101 505 aaKnown RBP22.37■■□□□ 1.17
COL9A3-210ENST00000472880 SARSP49591 514 aaKnown RBP22.37■■□□□ 1.17
COL9A3-210ENST00000472880 GJD3Q8N144 294 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 METTL13Q8N6R0 699 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 FAM167AQ96KS9 214 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 PPP1R16BQ96T49 567 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 ALG13Q9NP73 1137 aaKnown RBP22.37■■□□□ 1.17
COL9A3-210ENST00000472880 RNF216Q9NWF9 866 aaPredicted RBP22.37■■□□□ 1.17
COL9A3-210ENST00000472880 GABBR1Q9UBS5 961 aa22.37■■□□□ 1.17
COL9A3-210ENST00000472880 MYH9P35579 1960 aaKnown RBP22.36■■□□□ 1.17
COL9A3-210ENST00000472880 WDR64B1ANS9 1081 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 GPR182O15218 404 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 HYAL1Q12794 435 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 KIZQ2M2Z5 673 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 NAALADL2Q58DX5 795 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 TMEM31Q5JXX7 168 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 RUFY3Q7L099 469 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 TRIM22Q8IYM9 498 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 TMEM40Q8WWA1 233 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 KHSRPQ92945 711 aaKnown RBP eCLIP22.36■■□□□ 1.17
COL9A3-210ENST00000472880 LENG9Q96B70 501 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 CDHR5Q9HBB8 845 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 SH3GLB2Q9NR46 395 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 C1orf112Q9NSG2 853 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 PLAGL2Q9UPG8 496 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 PCDHB7Q9Y5E2 793 aa22.36■■□□□ 1.17
COL9A3-210ENST00000472880 MGEA5O60502 916 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 GATMP50440 423 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 CRYBB1P53674 252 aaPredicted RBP22.35■■□□□ 1.17
COL9A3-210ENST00000472880 EVCP57679 992 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 NLRP5P59047 1200 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 PPP2R3CQ969Q6 453 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 OSMRQ99650 979 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 ADAM2Q99965 735 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 ST3GAL5Q9UNP4 418 aa22.35■■□□□ 1.17
COL9A3-210ENST00000472880 EPB41L2O43491 1005 aaKnown RBP22.34■■□□□ 1.17
COL9A3-210ENST00000472880 VTNP04004 478 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 NEFLP07196 543 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 MAP7D2Q96T17 732 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 LRFN3Q9BTN0 628 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 RGS18Q9NS28 235 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 CYP46A1Q9Y6A2 500 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 EVPLQ92817 2033 aa22.34■■□□□ 1.17
COL9A3-210ENST00000472880 PI4K2BG5E9Z4 385 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 CPLX1O14810 134 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 MAGEB2O15479 319 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 CHMP2AO43633 222 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 GAS7O60861 476 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 ITGB1P05556 798 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 USP11P51784 963 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 CLCN3P51790 818 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 SSRP1Q08945 709 aaKnown RBP22.33■■□□□ 1.17
COL9A3-210ENST00000472880 TOB2Q14106 344 aaPredicted RBP22.33■■□□□ 1.17
COL9A3-210ENST00000472880 CTC1Q2NKJ3 1217 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 SPOUT1Q5T280 376 aaKnown RBP22.33■■□□□ 1.17
COL9A3-210ENST00000472880 SLC24A5Q71RS6 500 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 FAM228AQ86W67 206 aa22.33■■□□□ 1.17
COL9A3-210ENST00000472880 KLHL23Q8NBE8 558 aa22.33■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms