RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 ROM1Q03395 351 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 KIAA2012Q0VF49 1180 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 RGL3Q3MIN7 710 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 FKBP9P1Q75LS8 142 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 REXO1L1PQ8IX06 675 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 KLHL36Q8N4N3 616 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 TTC1Q99614 292 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 IFT22Q9H7X7 185 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 TOMM22Q9NS69 142 aa8.4□□□□□ -1.06
PTCD3-205ENST00000464541 USP36Q9P275 1121 aaKnown RBP8.4□□□□□ -1.06
PTCD3-205ENST00000464541 UBA6A0AVT1 1052 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 NOBOXO60393 691 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 BRINP1O60477 761 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 CD40P25942 277 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 PTX3P26022 381 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 IL13RA1P78552 427 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 SMAD3P84022 425 aaKnown RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 TTC38Q5R3I4 469 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 PHF19Q5T6S3 580 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 MCTP2Q6DN12 878 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 AFAP1L2Q8N4X5 818 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 MAML3Q96JK9 1138 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 GPR101Q96P66 508 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 BARX1Q9HBU1 254 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 PARD6AQ9NPB6 346 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 H2AFY2Q9P0M6 372 aaPredicted RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 RAPGEFL1Q9UHV5 662 aa8.39□□□□□ -1.07
PTCD3-205ENST00000464541 WDR3Q9UNX4 943 aaKnown RBP eCLIP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 APOBEC2Q9Y235 224 aaKnown RBP8.39□□□□□ -1.07
PTCD3-205ENST00000464541 MROH6A6NGR9 719 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 PRLP01236 227 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 APEX1P27695 318 aaKnown RBP8.38□□□□□ -1.07
PTCD3-205ENST00000464541 POLD1P28340 1107 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 WDR72Q3MJ13 1102 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 KANK2Q63ZY3 851 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 ESRP1Q6NXG1 681 aaKnown RBP8.38□□□□□ -1.07
PTCD3-205ENST00000464541 Q6ZUG5 572 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 PHYKPLQ8IUZ5 450 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 ERCC4Q92889 916 aaPredicted RBP8.38□□□□□ -1.07
PTCD3-205ENST00000464541 AJUBAQ96IF1 538 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 ZCCHC4Q9H5U6 513 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 SPTLC3Q9NUV7 552 aa8.38□□□□□ -1.07
PTCD3-205ENST00000464541 TGM5O43548 720 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 LSP1P33241 339 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 MAP3K12Q12852 859 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 NT5DC1Q5TFE4 455 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 BORAQ6PGQ7 559 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 ZNF610Q8N9Z0 462 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 KATNBL1Q9H079 304 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 ZMAT4Q9H898 229 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 EMC7Q9NPA0 242 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 USP40Q9NVE5 1235 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 ADAM29Q9UKF5 820 aa8.37□□□□□ -1.07
PTCD3-205ENST00000464541 CNGA1P29973 690 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 NFATC3Q12968 1075 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 STRN3Q13033 797 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 TOP3AQ13472 1001 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-205ENST00000464541 SLFN12LQ6IEE8 588 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 TIGD7Q6NT04 549 aaPredicted RBP8.36□□□□□ -1.07
PTCD3-205ENST00000464541 LRSAM1Q6UWE0 723 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 FRMD5Q7Z6J6 570 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 IFNL2Q8IZJ0 200 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 UBR7Q8N806 425 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 C7orf31Q8N865 590 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 NUDT10Q8NFP7 164 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 NUDT11Q96G61 164 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 XYLT2Q9H1B5 865 aa8.36□□□□□ -1.07
PTCD3-205ENST00000464541 MAFGO15525 162 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 ULK1O75385 1050 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 ETV4P43268 484 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 SLC6A3Q01959 620 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 TERF2Q15554 542 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 ATP13A4Q4VNC1 1196 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 LCE3BQ5TA77 95 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 TMEM200BQ69YZ2 307 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 PLEKHH3Q7Z736 793 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 FILIP1Q7Z7B0 1213 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 MBD6Q96DN6 1003 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 ZDHHC5Q9C0B5 715 aa8.35□□□□□ -1.07
PTCD3-205ENST00000464541 NEMP1O14524 444 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 BCAR1P56945 870 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 NFKB2Q00653 900 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 CD83Q01151 205 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 FBLN7Q53RD9 439 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 GRAMD4Q6IC98 578 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 STRA8Q7Z7C7 330 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 LGI4Q8N135 537 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 SYT8Q8NBV8 401 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 SLC5A5Q92911 643 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 TUBGCP5Q96RT8 1024 aa8.34□□□□□ -1.07
PTCD3-205ENST00000464541 A0A0G2JNJ9 132 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP8.33□□□□□ -1.08
PTCD3-205ENST00000464541 EYA4O95677 639 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 SESN3P58005 492 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 EIF4HQ15056 248 aaKnown RBP8.33□□□□□ -1.08
PTCD3-205ENST00000464541 DDB1Q16531 1140 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 ZFYVE27Q5T4F4 411 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 OTOP2Q7RTS6 562 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 KANSL1Q7Z3B3 1105 aa8.33□□□□□ -1.08
PTCD3-205ENST00000464541 FEZF2Q8TBJ5 459 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms