RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 ANKRD20A1Q5TYW2 823 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ANKRD20A3Q5VUR7 823 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ARMC3Q5W041 872 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 FAM43BQ6ZT52 329 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 SLC51AQ86UW1 340 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 RAD54LQ92698 747 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 C18orf8Q96DM3 657 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 IKZF4Q9H2S9 585 aa12.72□□□□□ -0.37
CPSF3-202ENST00000460593 ARPP21Q9UBL0 812 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-202ENST00000460593 DOCK2Q92608 1830 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 BHMG1C9JSJ3 638 aaPredicted RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 LGR5O75473 907 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 GH1P01241 217 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 BRD2P25440 801 aaKnown RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 DR1Q01658 176 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 ZCWPW2Q504Y3 356 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 FAM26FQ5R3K3 315 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 TCERG1LQ5VWI1 586 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 C3orf67Q6ZVT6 689 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 NT5DC3Q86UY8 548 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 NEK9Q8TD19 979 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 COA7Q96BR5 231 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 MAGEF1Q9HAY2 307 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 ADAM22Q9P0K1 906 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 CTNNAL1Q9UBT7 734 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 SAP30BPQ9UHR5 308 aaKnown RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 BCS1LQ9Y276 419 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 C1orf167Q5SNV9 1468 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 SRCAPQ6ZRS2 3230 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 MPHOSPH10O00566 681 aaKnown RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 ASAP2O43150 1006 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 CYP19A1P11511 503 aaPredicted RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 IL2RBP14784 551 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 POU5F1Q01860 360 aaKnown RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 ADAM9Q13443 819 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 LONRF1Q17RB8 773 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 NUGGCQ68CJ6 796 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 TRIM59Q8IWR1 403 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 SH3RF3Q8TEJ3 882 aaPredicted RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 NSUN4Q96CB9 384 aaKnown RBP12.71□□□□□ -0.37
CPSF3-202ENST00000460593 RMDN2Q96LZ7 410 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 PIGSQ96S52 555 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 PIDD1Q9HB75 910 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 MKNK2Q9HBH9 465 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 ZDHHC18Q9NUE0 388 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 AIPL1Q9NZN9 384 aa12.71□□□□□ -0.37
CPSF3-202ENST00000460593 TRPM3Q9HCF6 1732 aaPredicted RBP12.71□□□□□ -0.38
CPSF3-202ENST00000460593 ANKRD63C9JTQ0 380 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 TULP1O00294 542 aaPredicted RBP12.71□□□□□ -0.38
CPSF3-202ENST00000460593 SNX3O60493 162 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 GFPT2O94808 682 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 CLSTN1O94985 981 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 UCHL3P15374 230 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 CASP5P51878 434 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 GRM4Q14833 912 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 TAF11Q15544 211 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 ZDHHC24Q6UX98 284 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 CRELD2Q6UXH1 353 aaPredicted RBP12.71□□□□□ -0.38
CPSF3-202ENST00000460593 HOOK3Q86VS8 718 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 P3H4Q92791 437 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 CRAMP1Q96RY5 1269 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 TXLNGYQ9BZA5 131 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 SH3GLB2Q9NR46 395 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 PTPN22Q9Y2R2 807 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 RPTORQ8N122 1335 aa12.71□□□□□ -0.38
CPSF3-202ENST00000460593 TMEM110-MUSTN1A8MSY1 372 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 PLCG2P16885 1265 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 KLRC3Q07444 240 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 ITIH4Q14624 930 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 HERC4Q5GLZ8 1057 aaPredicted RBP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 FITM2Q8N6M3 262 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 CALR3Q96L12 384 aaKnown RBP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 TMEM47Q9BQJ4 181 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 OSBPL1AQ9BXW6 950 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 FAM114A2Q9NRY5 505 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 SEPT11Q9NVA2 429 aaKnown RBP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 DAAM1Q9Y4D1 1078 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 PVALEFA0A1B0GWK0 134 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 SPDYE5A6NIY4 337 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 H0Y3Z8 333 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 LAD1O00515 517 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 DDX3XO00571 662 aaKnown RBP eCLIP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 EDIL3O43854 480 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 PPP1R2P41236 205 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 GALCP54803 685 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 AP1ARQ63HQ0 302 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 DNAJC19Q96DA6 116 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 DDX23Q9BUQ8 820 aaKnown RBP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 EDEM3Q9BZQ6 932 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 PABPC3Q9H361 631 aaKnown RBP12.7□□□□□ -0.38
CPSF3-202ENST00000460593 STXBP5LQ9Y2K9 1186 aa12.7□□□□□ -0.38
CPSF3-202ENST00000460593 CCDC188H7C350 402 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 GSTA1P08263 222 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 H2AFZP0C0S5 128 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TSPY3P0CV98 308 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 TSPY8P0CW00 308 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 MSH2P43246 934 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 MARCKSL1P49006 195 aa12.69□□□□□ -0.38
CPSF3-202ENST00000460593 MAP2K1Q02750 393 aaPredicted RBP12.69□□□□□ -0.38
CPSF3-202ENST00000460593 CNGA2Q16280 664 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms