RNA–Protein interactions for RNA: ENST00000459756.5

COL7A1-203, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 818 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-203ENST00000459756 KDM3AQ9Y4C1 1321 aa18.18■□□□□ 0.5
COL7A1-203ENST00000459756 SLC37A4O43826 429 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 C22orf31O95567 290 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 OATP04181 439 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 RBM25P49756 843 aaKnown RBP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 HTRA4P83105 476 aaPredicted RBP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 PRKCEQ02156 737 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 TRMT1LQ7Z2T5 733 aaKnown RBP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 PHF6Q8IWS0 365 aaKnown RBP eCLIP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 ARNTL2Q8WYA1 636 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 TNFRSF25Q93038 417 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 FAM20AQ96MK3 541 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 LLPHQ9BRT6 129 aaKnown RBP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 AGO3Q9H9G7 860 aaKnown RBP18.17■□□□□ 0.5
COL7A1-203ENST00000459756 CERS4Q9HA82 394 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 KCNMB3Q9NPA1 279 aa18.17■□□□□ 0.5
COL7A1-203ENST00000459756 TBX3O15119 743 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 MAGEB2O15479 319 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 ZNF862O60290 1169 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 CCNT1O60563 726 aaKnown RBP18.16■□□□□ 0.5
COL7A1-203ENST00000459756 MMP1P03956 469 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 ST3GAL1Q11201 340 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 NR5A1Q13285 461 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 FAM43BQ6ZT52 329 aaPredicted RBP18.16■□□□□ 0.5
COL7A1-203ENST00000459756 ZSCAN31Q96LW9 406 aaPredicted RBP18.16■□□□□ 0.5
COL7A1-203ENST00000459756 FTHL17Q9BXU8 183 aa18.16■□□□□ 0.5
COL7A1-203ENST00000459756 EVPLQ92817 2033 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 LINC01553A4QN01 128 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 ENPP3O14638 875 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 UPP2O95045 317 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 POU3F3P20264 500 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-203ENST00000459756 CD52P31358 61 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 PAK2Q13177 524 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 UGCGQ16739 394 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 EARS2Q5JPH6 523 aaKnown RBP18.15■□□□□ 0.5
COL7A1-203ENST00000459756 KRT40Q6A162 431 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 METTL13Q8N6R0 699 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 SP7Q8TDD2 431 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-203ENST00000459756 TGS1Q96RS0 853 aaKnown RBP18.15■□□□□ 0.5
COL7A1-203ENST00000459756 YME1L1Q96TA2 773 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 SH2B1Q9NRF2 756 aaPredicted RBP18.15■□□□□ 0.5
COL7A1-203ENST00000459756 PADI3Q9ULW8 664 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 LOXHD1Q8IVV2 1947 aa18.15■□□□□ 0.5
COL7A1-203ENST00000459756 EPOPA6NHQ4 379 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 GTPBP6O43824 516 aaPredicted RBP18.14■□□□□ 0.49
COL7A1-203ENST00000459756 ERVK-21P61565 698 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 PPP2R5CQ13362 524 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 CCDC83Q8IWF9 413 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 DIS3L2Q8IYB7 885 aaKnown RBP18.14■□□□□ 0.49
COL7A1-203ENST00000459756 ZNF710Q8N1W2 664 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 VAV3Q9UKW4 847 aa18.14■□□□□ 0.49
COL7A1-203ENST00000459756 COL4A6Q14031 1691 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 FAM205CA6NFA0 338 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 BTBD18B2RXH4 712 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 RFXAPO00287 272 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 MARCH6O60337 910 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 TMOD1P28289 359 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 XKR3Q5GH77 459 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 ODR4Q5SWX8 454 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 SLFN12Q8IYM2 578 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 IL27Q8NEV9 243 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 HAS1Q92839 578 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 MAP7D2Q96T17 732 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 NIFKQ9BYG3 293 aaKnown RBP18.13■□□□□ 0.49
COL7A1-203ENST00000459756 UPF2Q9HAU5 1272 aaKnown RBP18.13■□□□□ 0.49
COL7A1-203ENST00000459756 GINS2Q9Y248 185 aa18.13■□□□□ 0.49
COL7A1-203ENST00000459756 BAG4O95429 457 aaKnown RBP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 FOSBP53539 338 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 CRYBB1P53674 252 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 PSMC5P62195 406 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 HMGN5P82970 282 aaKnown RBP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 TBC1D8BQ0IIM8 1120 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 RABEP1Q15276 862 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 SAFBQ15424 915 aaKnown RBP eCLIP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 EFCAB12Q6NXP0 572 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 SPRED2Q7Z698 418 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 POTEDQ86YR6 584 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 LINC01465Q8N7H1 131 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 PPM1EQ8WY54 764 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 TSPYL2Q9H2G4 693 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 SEPT9Q9UHD8 586 aaPredicted RBP18.12■□□□□ 0.49
COL7A1-203ENST00000459756 MTCH2Q9Y6C9 303 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 REV3LO60673 3130 aa18.12■□□□□ 0.49
COL7A1-203ENST00000459756 TTC3P53804 2025 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 EML1O00423 815 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 DKC1O60832 514 aaKnown RBP eCLIP18.11■□□□□ 0.49
COL7A1-203ENST00000459756 GPR32O75388 356 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 RPS6KA5O75582 802 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 STBD1O95210 358 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 VTNP04004 478 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 CLCN3P51790 818 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 GRB10Q13322 594 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 TARBP2Q15633 366 aaKnown RBP18.11■□□□□ 0.49
COL7A1-203ENST00000459756 CCDC85BQ15834 202 aaPredicted RBP18.11■□□□□ 0.49
COL7A1-203ENST00000459756 KIZQ2M2Z5 673 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 BANK1Q8NDB2 785 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 LINC01599Q8WXQ3 324 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 C8orf76Q96K31 380 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 SAMD11Q96NU1 681 aa18.11■□□□□ 0.49
COL7A1-203ENST00000459756 TMX1Q9H3N1 280 aa18.11■□□□□ 0.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms