RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 TPCN2Q8NHX9 752 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 PRCCQ92733 491 aaPredicted RBP9.82□□□□□ -0.84
COPB1-202ENST00000439561 IFT74Q96LB3 600 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 EDEM3Q9BZQ6 932 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 STMN4Q9H169 189 aaPredicted RBP9.82□□□□□ -0.84
COPB1-202ENST00000439561 ECT2Q9H8V3 914 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 PCDHGC5Q9Y5F6 944 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 SPEF2Q9C093 1822 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 ANP32DO95626 131 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 SESN3P58005 492 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 AGBL2Q5U5Z8 902 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 CAPN12Q6ZSI9 719 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 FAM47EQ6ZV65 393 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 TRPM8Q7Z2W7 1104 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 FBXO25Q8TCJ0 367 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 EPS8L3Q8TE67 593 aaKnown RBP9.82□□□□□ -0.84
COPB1-202ENST00000439561 TATDN2Q93075 761 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 NT5C3AQ9H0P0 336 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 FGFR1OP2Q9NVK5 253 aa9.82□□□□□ -0.84
COPB1-202ENST00000439561 NOP53Q9NZM5 478 aaKnown RBP9.82□□□□□ -0.84
COPB1-202ENST00000439561 TCP11X1B4DZS4 312 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 H0Y3Z8 333 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 CALUO43852 315 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 SUN1O94901 812 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 FAM13AO94988 1023 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 CDK8P49336 464 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 EIF3BP55884 814 aaKnown RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 ELF3P78545 371 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 ZNF746Q6NUN9 644 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 SFR1Q86XK3 245 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 HOMER3Q9NSC5 361 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 DNM3Q9UQ16 869 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 BZW2Q9Y6E2 419 aaKnown RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 MYH2Q9UKX2 1941 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 ZNF804BA4D1E1 1349 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L15C9J2P7 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L13C9JLJ4 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L11C9JVI0 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L18D6R9N7 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L22D6RA61 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L17D6RBQ6 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L19D6RCP7 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L20D6RJB6 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 BTDP43251 543 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L24Q0WX57 530 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 NKX1-1Q15270 411 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 USP17L6PQ6QN14 398 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 KCTD1Q719H9 257 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 SLITRK6Q9H5Y7 841 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 PSTPIP2Q9H939 334 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 ABCF3Q9NUQ8 709 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 NKIRAS1Q9NYS0 192 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 IGF2BP3O00425 579 aaKnown RBP eCLIP9.81□□□□□ -0.84
COPB1-202ENST00000439561 EVI5O60447 810 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 NOL4O94818 638 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 UBOX5O94941 541 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 KCNJ1P48048 391 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 GSTO1P78417 241 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 TAF11Q15544 211 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 SEPT7Q16181 437 aaKnown RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 LONRF1Q17RB8 773 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 USH1GQ495M9 461 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 TBC1D10BQ4KMP7 808 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 ZNF572Q7Z3I7 529 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 TXNRD3Q86VQ6 643 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 MYCT1Q8N699 235 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 UBL4BQ8N7F7 174 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 ERMNQ8TAM6 284 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 ZNF384Q8TF68 577 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 CEP63Q96MT8 703 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 SETDB2Q96T68 719 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 PPP1R12CQ9BZL4 782 aa9.81□□□□□ -0.84
COPB1-202ENST00000439561 BSDC1Q9NW68 430 aaPredicted RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 RTCBQ9Y3I0 505 aaKnown RBP9.81□□□□□ -0.84
COPB1-202ENST00000439561 LOC102724428A0A0B4J2F2 783 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 DRD4P21917 467 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 HSPA2P54652 639 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 SIK1P57059 783 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 KCNJ2P63252 427 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 BYSLQ13895 437 aaKnown RBP9.8□□□□□ -0.84
COPB1-202ENST00000439561 CCDC6Q16204 474 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 AADACL2Q6P093 401 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 DPP8Q6V1X1 898 aaPredicted RBP9.8□□□□□ -0.84
COPB1-202ENST00000439561 SLC35G2Q8TBE7 412 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 FAM129AQ9BZQ8 928 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 SLC12A6Q9UHW9 1150 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 MTUS1Q9ULD2 1270 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 HIP1RO75146 1068 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 UPP2O95045 317 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 PDHA1P08559 390 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 HS2ST1Q7LGA3 356 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 FBF1Q8TES7 1133 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 C18orf8Q96DM3 657 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 TRIM7Q9C029 511 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 SEMA4AQ9H3S1 761 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 KLHL14Q9P2G3 628 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 NR2E1Q9Y466 385 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 LCA5LO95447 670 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 TRIM49P0CI25 452 aa9.8□□□□□ -0.84
COPB1-202ENST00000439561 TRIM49CP0CI26 452 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms