RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 TMEM39BQ9GZU3 492 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 PLEKHA4Q9H4M7 779 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 PIM2Q9P1W9 311 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 TMEM59LQ9UK28 342 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 PACSIN2Q9UNF0 486 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 CLSTN1O94985 981 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 EPS15P42566 896 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 TTMPQ5BVD1 217 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 C10orf76Q5T2E6 689 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 MIGA2Q7L4E1 593 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 ZNF571Q7Z3V5 609 aaPredicted RBP15.65■□□□□ 0.1
LIG1-202ENST00000427526 FAM151AQ8WW52 585 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 ZHX3Q9H4I2 956 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 EPB41L5Q9HCM4 733 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 CNTNAP1P78357 1384 aa15.65■□□□□ 0.1
LIG1-202ENST00000427526 ZSCAN5CA6NGD5 496 aaPredicted RBP15.64■□□□□ 0.09
LIG1-202ENST00000427526 CLGNO14967 610 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 HEXIM1O94992 359 aaKnown RBP15.64■□□□□ 0.09
LIG1-202ENST00000427526 FAM153BP0C7A2 387 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 UCHL3P15374 230 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 FAM153CQ494X1 144 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 SPDYE2Q495Y8 402 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 PRR16Q569H4 304 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 GBP6Q6ZN66 633 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 GMCL1P1Q8NEA9 526 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 ACER1Q8TDN7 264 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 ARL8AQ96BM9 186 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 ZIM3Q96PE6 472 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 REEP2Q9BRK0 252 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 FAM153AQ9UHL3 310 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 DNM3Q9UQ16 869 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 CES2O00748 559 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 HSF2BPO75031 334 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 PON1P27169 355 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 KIAA1755Q5JYT7 1200 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 ARMCX3Q9UH62 379 aaPredicted RBP15.64■□□□□ 0.09
LIG1-202ENST00000427526 HERC5Q9UII4 1024 aaKnown RBP15.64■□□□□ 0.09
LIG1-202ENST00000427526 NFU1Q9UMS0 254 aa15.64■□□□□ 0.09
LIG1-202ENST00000427526 MEIS1O00470 390 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 PDXKO00764 312 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 AFPP02771 609 aaKnown RBP15.63■□□□□ 0.09
LIG1-202ENST00000427526 GUCY2DQ02846 1103 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 PABPC4Q13310 644 aaKnown RBP eCLIP15.63■□□□□ 0.092e-6■■■■□ 26.1
LIG1-202ENST00000427526 ENOX2Q16206 610 aaKnown RBP15.63■□□□□ 0.09
LIG1-202ENST00000427526 SFR1Q86XK3 245 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 MREGQ8N565 214 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 USP38Q8NB14 1042 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 GMCL1Q96IK5 515 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 CAPS2Q9BXY5 557 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 BZW2Q9Y6E2 419 aaKnown RBP15.63■□□□□ 0.09
LIG1-202ENST00000427526 GRIN2DO15399 1336 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 FAM86B1E9PN63 330 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 FAM86B2P0C5J1 330 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 MYBP10242 640 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 BMP3P12645 472 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 BMT2Q1RMZ1 405 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 NBPF9Q3BBW0 867 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 USH1GQ495M9 461 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 RBM46Q8TBY0 533 aaKnown RBP15.63■□□□□ 0.09
LIG1-202ENST00000427526 KRT12Q99456 494 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 YY1AP1Q9H869 796 aa15.63■□□□□ 0.09
LIG1-202ENST00000427526 ESYT3A0FGR9 886 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 AKAP3O75969 853 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 PRKCIP41743 596 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 DNA2P51530 1060 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 CORO7P57737 925 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 SKOR1P84550 965 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 MCTP2Q6DN12 878 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 ERMNQ8TAM6 284 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 PIK3R5Q8WYR1 880 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 NAGPAQ9UK23 515 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 NENFQ9UMX5 172 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 KIF13BQ9NQT8 1826 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 ZBTB48P10074 688 aaPredicted RBP15.62■□□□□ 0.09
LIG1-202ENST00000427526 SREBF1P36956 1147 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 PAK2Q13177 524 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 EPHA7Q15375 998 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 EXOC3L4Q17RC7 722 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 LRRC57Q8N9N7 239 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 CASKIN2Q8WXE0 1202 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 FAM20AQ96MK3 541 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 AMNQ9BXJ7 453 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 FBXL5Q9UKA1 691 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 DNAJC21Q5F1R6 531 aaKnown RBP15.62■□□□□ 0.09
LIG1-202ENST00000427526 SYDE2Q5VT97 1194 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 SIX2Q9NPC8 291 aa15.62■□□□□ 0.09
LIG1-202ENST00000427526 GEMIN8Q9NWZ8 242 aaKnown RBP15.62■□□□□ 0.09
LIG1-202ENST00000427526 EIF3HO15372 352 aaKnown RBP eCLIP15.61■□□□□ 0.09
LIG1-202ENST00000427526 CALUO43852 315 aaPredicted RBP15.61■□□□□ 0.09
LIG1-202ENST00000427526 XRCC5P13010 732 aaKnown RBP15.61■□□□□ 0.09
LIG1-202ENST00000427526 CIITAP33076 1130 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 TGFB2P61812 414 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 DALRD3Q5D0E6 543 aaKnown RBP15.61■□□□□ 0.09
LIG1-202ENST00000427526 AGBL3Q8NEM8 1001 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 IFT81Q8WYA0 676 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 SPAG5Q96R06 1193 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 VAV3Q9UKW4 847 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 ASTN1O14525 1302 aa15.61■□□□□ 0.09
LIG1-202ENST00000427526 COL2A1P02458 1487 aaPredicted RBP15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms