RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 MAGI3Q5TCQ9 1506 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 NCOA3Q9Y6Q9 1424 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 SHBGP04278 402 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 RAPGEF1Q13905 1077 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 CDC37Q16543 378 aaPredicted RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 TMEM132EQ6IEE7 984 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC82Q8N4S0 544 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 SERTAD1Q9UHV2 236 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 HBS1LQ9Y450 684 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 UBN2Q6ZU65 1347 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 PTPDC1A2A3K4 754 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 LMNAP02545 664 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 CHN1P15882 459 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 AIMP1Q12904 312 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 ANO4Q32M45 955 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 SYDE2Q5VT97 1194 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 DISC1Q9NRI5 854 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 A0A0G2JND7 137 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 RPS6KB1P23443 525 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 HPCAP84074 193 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 PERM1Q5SV97 790 aa3.67□□□□□ -1.82
SYNE1-212ENST00000423061 RBM44Q6ZP01 1051 aaKnown RBP3.67□□□□□ -1.82
SYNE1-212ENST00000423061 EPB41P11171 864 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SH3D19Q5HYK7 790 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 IRGCQ6NXR0 463 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 YTHDF3Q7Z739 585 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZIM3Q96PE6 472 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TMBIM4Q9HC24 238 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 DMGDHQ9UI17 866 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GGA2Q9UJY4 613 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SCINQ9Y6U3 715 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 A0A087WZG4 1122 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TMEM221A6NGB7 291 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 AGPSO00116 658 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TMC5Q6UXY8 1006 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZBTB46Q86UZ6 589 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 LSAMPQ13449 338 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TRIM14Q14142 442 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PPIP5K1Q6PFW1 1433 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RNF17Q9BXT8 1623 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BICDL2A1A5D9 508 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 H7C1W4 665 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ATP9BO43861 1147 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SEC24DO94855 1032 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KPNA1P52294 538 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 EPHB4P54760 987 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ADCK5Q3MIX3 580 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SNX30Q5VWJ9 437 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 BPHLQ86WA6 291 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SUPT20HQ8NEM7 779 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ACAP3Q96P50 834 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 COMMD3-BMI1R4GMX3 469 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 A0A1W2PP64 1363 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MAN1A2O60476 641 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KRT7P08729 469 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MSL3P1P0C860 447 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ITGADQ13349 1161 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TUBA3CQ13748 450 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 B3GNT6Q6ZMB0 384 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ATP6V1C1P21283 382 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KRT23Q9C075 422 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FAM207AQ9NSI2 230 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZC3H13Q5T200 1668 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PHEXP78562 749 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PLOD1Q02809 727 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 LRIG3Q6UXM1 1119 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SMYD4Q8IYR2 804 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 HPS1Q92902 700 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CFAP57Q96MR6 1250 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RETREG1Q9H6L5 497 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RTL9Q8NET4 1388 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KLHL41O60662 606 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SPAG7O75391 227 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CDH3P22223 829 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 MRPS15P82914 257 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ARHGAP4P98171 946 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 XRCC4Q13426 336 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CABP7Q86V35 215 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TCAIMQ8N3R3 496 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 TRAF3IP1Q8TDR0 691 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 LSG1Q9H089 658 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZRANB1Q9UGI0 708 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 LRCH1Q9Y2L9 728 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PRR23AA6NEV1 266 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SCAIQ8N9R8 606 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RBM46Q8TBY0 533 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 C2orf49Q9BVC5 232 aaPredicted RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 SPATA16Q9BXB7 569 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 OSBPL7Q9BZF2 842 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 PLGRKTQ9HBL7 147 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ZNF229Q9UJW7 825 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 GOLGA8CPA6NN73 597 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 FOXN1O15353 648 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 ASLP04424 464 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CALB2P22676 271 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 EEF1B2P24534 225 aaKnown RBP3.66□□□□□ -1.82
SYNE1-212ENST00000423061 KLC3Q6P597 504 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 IZUMO2Q6UXV1 221 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 CCDC51Q96ER9 411 aa3.66□□□□□ -1.82
SYNE1-212ENST00000423061 RNF41Q9H4P4 317 aaPredicted RBP3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms