RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 RASGRP4Q8TDF6 673 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 LENG9Q96B70 501 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 PABPC5Q96DU9 382 aaKnown RBP13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 C22orf23Q9BZE7 217 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 ZSWIM6Q9HCJ5 1215 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 RNF216Q9NWF9 866 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 VPS54Q9P1Q0 977 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 CEP131Q9UPN4 1083 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 PCDHA10Q9Y5I2 948 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 MAFBQ9Y5Q3 323 aaPredicted RBP13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 CYP46A1Q9Y6A2 500 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 ATG2AQ2TAZ0 1938 aa13.09□□□□□ -0.31
SQSTM1-203ENST00000422245 ZBTB42B2RXF5 422 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 CPLX1O14810 134 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 NCK2O43639 380 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 MMP1P03956 469 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 CCT2P78371 535 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 TOB2Q14106 344 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 KIAA0319LQ8IZA0 1049 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 FAM177A1Q8N128 213 aaPredicted RBP13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 CRIPAKQ8N1N5 446 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 NEK9Q8TD19 979 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 P2RX5Q93086 422 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 NCOA5Q9HCD5 579 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 ERVK-5Q9HDB9 667 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 C1orf112Q9NSG2 853 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 LRFN2Q9ULH4 789 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 GINS2Q9Y248 185 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 MRPL42Q9Y6G3 142 aaKnown RBP13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 KIAA1671Q9BY89 1806 aa13.08□□□□□ -0.32
SQSTM1-203ENST00000422245 EVPLQ92817 2033 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 GRM6O15303 877 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 PPFIA3O75145 1194 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 RPS6KA5O75582 802 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 ATP4AP20648 1035 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 COL9A1P20849 921 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 SARSP49591 514 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 USP11P51784 963 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 JAK3P52333 1124 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 NLRP5P59047 1200 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 NFX1Q12986 1120 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 TMEM266Q2M3C6 531 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 NAALADL2Q58DX5 795 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 PTCRAQ6ISU1 281 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 CPLX2Q6PUV4 134 aaKnown RBP13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 RTN4RL1Q86UN2 441 aaPredicted RBP13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 ZNF710Q8N1W2 664 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 UIMC1Q96RL1 719 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 MAP7D2Q96T17 732 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 RIT2Q99578 217 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 TM6SF1Q9BZW5 370 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 TMX1Q9H3N1 280 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 GABBR1Q9UBS5 961 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 FAM50BQ9Y247 325 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 SAMM50Q9Y512 469 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 WDR81Q562E7 1941 aa13.07□□□□□ -0.32
SQSTM1-203ENST00000422245 DENND3A2RUS2 1198 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 GPR182O15218 404 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 MAGEB2O15479 319 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 GAS7O60861 476 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 DEXIO95424 95 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 OATP04181 439 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 SFNP31947 248 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 CRYBB1P53674 252 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 SSRP1Q08945 709 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 METTL13Q8N6R0 699 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 GADD45GIP1Q8TAE8 222 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 TMEM40Q8WWA1 233 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 SLC5A5Q92911 643 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 PPP2R3CQ969Q6 453 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 ZNF274Q96GC6 653 aaPredicted RBP13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 DISC1Q9NRI5 854 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 PCDHA4Q9UN74 947 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 NOC2LQ9Y3T9 749 aaKnown RBP13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 MYO7AQ13402 2215 aa13.06□□□□□ -0.32
SQSTM1-203ENST00000422245 GRXCR2A6NFK2 248 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 H3BQ06 376 aaPredicted RBP13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 MSH4O15457 936 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 NEFLP07196 543 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 IL9P15248 144 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 TMOD1P28289 359 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 PRKCEQ02156 737 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 KIZQ2M2Z5 673 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 PAN2Q504Q3 1202 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 LRCH2Q5VUJ6 765 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 GALNT17Q6IS24 598 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 SLC24A5Q71RS6 500 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 FAM178BQ8IXR5 827 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 DAGLBQ8NCG7 672 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 RDM1Q8NG50 284 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 TBCKQ8TEA7 893 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 OSMRQ99650 979 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 ADAM2Q99965 735 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 TEKT3Q9BXF9 490 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 UPF3BQ9BZI7 483 aaKnown RBP13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 RGS18Q9NS28 235 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 CLDND1Q9NY35 253 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 ST3GAL5Q9UNP4 418 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 PLAGL2Q9UPG8 496 aa13.05□□□□□ -0.32
SQSTM1-203ENST00000422245 PCDHB7Q9Y5E2 793 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms