RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 INHBEP58166 350 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 TMEM132BQ14DG7 1078 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 SLC9C1Q4G0N8 1177 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 SLC30A10Q6XR72 485 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ANKRD23Q86SG2 305 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 ALS2CR12Q96Q35 445 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 A1CFQ9NQ94 594 aaKnown RBP9.22□□□□□ -0.93
USP54-203ENST00000418501 RGL1Q9NZL6 768 aa9.22□□□□□ -0.93
USP54-203ENST00000418501 AKR1B10O60218 316 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 MATR3P43243 847 aaKnown RBP eCLIP9.21□□□□□ -0.93
USP54-203ENST00000418501 SEPT14Q6ZU15 432 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 INTS8Q75QN2 995 aaKnown RBP9.21□□□□□ -0.93
USP54-203ENST00000418501 BANK1Q8NDB2 785 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 SEPT1Q8WYJ6 367 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 ERGIC2Q96RQ1 377 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 KCND1Q9NSA2 647 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 SEPT9Q9UHD8 586 aaPredicted RBP9.21□□□□□ -0.93
USP54-203ENST00000418501 COL4A5P29400 1685 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 CCL15-CCL14A0A0B4J2E2 113 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 BMP6P22004 513 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 MAPK4P31152 587 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 NCBP1Q09161 790 aaKnown RBP9.21□□□□□ -0.93
USP54-203ENST00000418501 NFIL3Q16649 462 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 CCL15Q16663 113 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 BMT2Q1RMZ1 405 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 DPP9Q86TI2 863 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 CCAR2Q8N163 923 aaKnown RBP9.21□□□□□ -0.93
USP54-203ENST00000418501 PIGOQ8TEQ8 1089 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 GLG1Q92896 1179 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 LENG9Q96B70 501 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 KMT5AQ9NQR1 393 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 TRAF3IP3Q9Y228 551 aa9.21□□□□□ -0.93
USP54-203ENST00000418501 MANSC4A6NHS7 340 aaPredicted RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 TULP1O00294 542 aaPredicted RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 FAM186BQ8IYM0 893 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 ZNF507Q8TCN5 953 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 DNAJC19Q96DA6 116 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 P2RX7Q99572 595 aaKnown RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 GABBR1Q9UBS5 961 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 NRBP1Q9UHY1 535 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 ZNF215Q9UL58 517 aaPredicted RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 ZNF214Q9UL59 606 aaPredicted RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 SCAF8Q9UPN6 1271 aaKnown RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 ADAMTSL1Q8N6G6 1762 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 SPATA31C2B4DYI2 1134 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 IRF6O14896 467 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 LDHAP00338 332 aaKnown RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 NR3C1P04150 777 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 ALDH5A1P51649 535 aaPredicted RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 RAD51AP2Q09MP3 1159 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 TDRD12Q587J7 1177 aaKnown RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 SCFD2Q8WU76 684 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 ZCCHC17Q9NP64 241 aaKnown RBP9.21□□□□□ -0.94
USP54-203ENST00000418501 MYO6Q9UM54 1294 aa9.21□□□□□ -0.94
USP54-203ENST00000418501 NKRFO15226 690 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP54-203ENST00000418501 HIP1RO75146 1068 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SUPT20HL2P0C7V6 817 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SPATA31C1P0DKV0 1188 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 ERCC3P19447 782 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 TMOD1P28289 359 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 RTP1P59025 263 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 RBL2Q08999 1139 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 KIF5AQ12840 1032 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 LRRC41Q15345 812 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SURF1Q15526 300 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SFMBT2Q5VUG0 894 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 ABRAQ8N0Z2 381 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 C2orf40Q9H1Z8 148 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 ARGLU1Q9NWB6 273 aaPredicted RBP9.2□□□□□ -0.94
USP54-203ENST00000418501 CAPN11Q9UMQ6 739 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 FRMD3A2A2Y4 597 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 OPLAHO14841 1288 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 P4HA2O15460 535 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 CDC42EP1Q00587 391 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 C10orf76Q5T2E6 689 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 ARMCX5Q6P1M9 558 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 C16orf45Q96MC5 204 aaPredicted RBP9.2□□□□□ -0.94
USP54-203ENST00000418501 FRMD4AQ9P2Q2 1039 aaPredicted RBP9.2□□□□□ -0.94
USP54-203ENST00000418501 TRIM49BA6NDI0 452 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 YBX3P16989 372 aaKnown RBP eCLIP9.2□□□□□ -0.94
USP54-203ENST00000418501 ITGB5P18084 799 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 CASP14P31944 242 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SPIRE1Q08AE8 756 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 SREBF2Q12772 1141 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 DCAF17Q5H9S7 520 aaPredicted RBP9.2□□□□□ -0.94
USP54-203ENST00000418501 SPIRE2Q8WWL2 714 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 MAP7D2Q96T17 732 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 MTRQ99707 1265 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 HAUS4Q9H6D7 363 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 CEP72Q9P209 647 aa9.2□□□□□ -0.94
USP54-203ENST00000418501 ADAMTS3O15072 1205 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 EFNA5P52803 228 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 LAMC2Q13753 1193 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 ASIC2Q16515 512 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 EXOC3L4Q17RC7 722 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 SWSAP1Q6NVH7 229 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 C1orf186Q6ZWK4 172 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 CALR3Q96L12 384 aaKnown RBP9.19□□□□□ -0.94
USP54-203ENST00000418501 NUDT12Q9BQG2 462 aa9.19□□□□□ -0.94
USP54-203ENST00000418501 SMARCAD1Q9H4L7 1026 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms