RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 GLTPD2A6NH11 291 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 PDHXO00330 501 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 TBC1D12O60347 775 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 H2AFZP0C0S5 128 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 ATF7P17544 494 aaPredicted RBP9.91□□□□□ -0.82
LIG4-202ENST00000405925 DGKZQ13574 1117 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 H2AFVQ71UI9 128 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 FAM213AQ9BRX8 229 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 MROH8Q9H579 483 aa9.91□□□□□ -0.82
LIG4-202ENST00000405925 GH1P01241 217 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 FGRP09769 529 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 GCLMP48507 274 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 PTK2Q05397 1052 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 DPYDQ12882 1025 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 INTS8Q75QN2 995 aaKnown RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 IPO4Q8TEX9 1081 aaKnown RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 GPRASP2Q96D09 838 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 SAAL1Q96ER3 474 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 CLMNQ96JQ2 1002 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 MOV10L1Q9BXT6 1211 aaKnown RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 CCDC113Q9H0I3 377 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 RPF1Q9H9Y2 349 aaKnown RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 PYCARDQ9ULZ3 195 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 PPP2R2CQ9Y2T4 447 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.9□□□□□ -0.82
LIG4-202ENST00000405925 RHOXF2BP0C7M4 288 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 MFAP3P55082 362 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 TNNC1P63316 161 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 SH3BP5LQ7L8J4 393 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 GSTA5Q7RTV2 222 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 SMAP1Q8IYB5 467 aaPredicted RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 RHOXF2Q9BQY4 288 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 HESX1Q9UBX0 185 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 RGS17Q9UGC6 210 aaPredicted RBP9.9□□□□□ -0.82
LIG4-202ENST00000405925 PCDHB4Q9Y5E5 795 aa9.9□□□□□ -0.82
LIG4-202ENST00000405925 GFPT2O94808 682 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 ACTR2P61160 394 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 SEL1L2Q5TEA6 688 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 MOXD1Q6UVY6 613 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 PEX26Q7Z412 305 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 FAM133AQ8N9E0 248 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 C7orf25Q9BPX7 421 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 SMARCAD1Q9H4L7 1026 aa9.9□□□□□ -0.83
LIG4-202ENST00000405925 UBE2TQ9NPD8 197 aaPredicted RBP9.9□□□□□ -0.83
LIG4-202ENST00000405925 TERF1P54274 439 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 PPFIA1Q13136 1202 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 TWF2Q6IBS0 349 aaKnown RBP9.89□□□□□ -0.83
LIG4-202ENST00000405925 FBXO16Q8IX29 292 aaPredicted RBP9.89□□□□□ -0.83
LIG4-202ENST00000405925 GOLGA1Q92805 767 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 KLRG1Q96E93 195 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 CEP63Q96MT8 703 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 UNC45AQ9H3U1 944 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 EFCC1Q9HA90 598 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 LGALS16A8MUM7 142 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 BUB1O43683 1085 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 MED24O75448 989 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 CD58P19256 250 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 CDC25BP30305 580 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 SNX16P57768 344 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 ZBED6P86452 979 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 MAP2K1Q02750 393 aaPredicted RBP9.89□□□□□ -0.83
LIG4-202ENST00000405925 FMR1Q06787 632 aaKnown RBP eCLIP9.89□□□□□ -0.83
LIG4-202ENST00000405925 ANKRD40Q6AI12 368 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 PLEKHH3Q7Z736 793 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 ZC3H15Q8WU90 426 aaKnown RBP9.89□□□□□ -0.83
LIG4-202ENST00000405925 RNF34Q969K3 372 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 RRAGDQ9NQL2 400 aaPredicted RBP9.89□□□□□ -0.83
LIG4-202ENST00000405925 PXMP2Q9NR77 195 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 TUBE1Q9UJT0 475 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 MTUS1Q9ULD2 1270 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 CEP104O60308 925 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 RHOBTB3O94955 611 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 TRIM49P0CI25 452 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 TRIM49CP0CI26 452 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 FERP16591 822 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 LMAN1P49257 510 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 KCNH2Q12809 1159 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 ARID5BQ14865 1188 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 MUM1L1Q5H9M0 696 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 SCARA5Q6ZMJ2 495 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 IL17RAQ96F46 866 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 CARD6Q9BX69 1037 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 SLC38A10Q9HBR0 1119 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 AGTPBP1Q9UPW5 1226 aa9.89□□□□□ -0.83
LIG4-202ENST00000405925 LDHAP00338 332 aaKnown RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 CNTN2Q02246 1040 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 GRB10Q13322 594 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 RPS6KA1Q15418 735 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 SARM1Q6SZW1 724 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 ADSSL1Q8N142 457 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 C2orf40Q9H1Z8 148 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 TAF1DQ9H5J8 278 aaPredicted RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 A1CFQ9NQ94 594 aaKnown RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 MAP3K20Q9NYL2 800 aaKnown RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 ODF2LQ9ULJ1 636 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 SYNPO2Q9UMS6 1093 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 TEX33O43247 280 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 EGFRP00533 1210 aa9.88□□□□□ -0.83
LIG4-202ENST00000405925 NSFP46459 744 aaKnown RBP9.88□□□□□ -0.83
LIG4-202ENST00000405925 RNASELQ05823 741 aaKnown RBP9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms