RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MTRF1LQ9UGC7 380 aaKnown RBP12.95□□□□□ -0.34
HMGB1-206ENST00000405805 USTQ9Y2C2 406 aa12.95□□□□□ -0.34
HMGB1-206ENST00000405805 LRRC10BA6NIK2 292 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 TTI1O43156 1089 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 AKR1B1P15121 316 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 COG7P83436 770 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 AMPD2Q01433 879 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 LRRC63Q05C16 580 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 LRRC14Q15048 493 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 CREG2Q8IUH2 290 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 STK17AQ9UEE5 414 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 CALUO43852 315 aaPredicted RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 TRIM49P0CI25 452 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 TRIM49CP0CI26 452 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 GRIK5Q16478 980 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 KCNK18Q7Z418 384 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 NLRP14Q86W24 1093 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 GUF1Q8N442 669 aaKnown RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 RNF10Q8N5U6 811 aaKnown RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 VIPAS39Q9H9C1 493 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 RIC8AQ9NPQ8 531 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 DYTNA2CJ06 578 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 CCDC169A6NNP5 214 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 PPP1R37O75864 691 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 AFPP02771 609 aaKnown RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 MYL1P05976 194 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 RASA1P20936 1047 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 CDC25CP30307 473 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 FUT2Q10981 343 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 NSMFQ6X4W1 530 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 FBXO33Q7Z6M2 555 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 ELAC2Q9BQ52 826 aaKnown RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 MTA3Q9BTC8 594 aa12.94□□□□□ -0.34
HMGB1-206ENST00000405805 NSRP1Q9H0G5 558 aaKnown RBP12.94□□□□□ -0.34
HMGB1-206ENST00000405805 ZNF263O14978 683 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 HARSP12081 509 aaKnown RBP12.93□□□□□ -0.34
HMGB1-206ENST00000405805 NBPF9Q3BBW0 867 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 PPM1KQ8N3J5 372 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 BICD1Q96G01 975 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 LEMD3Q9Y2U8 911 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 ZNF711Q9Y462 761 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 RCSD1Q6JBY9 416 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 CEP63Q96MT8 703 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 LBHD1Q9BQE6 289 aaPredicted RBP12.93□□□□□ -0.34
HMGB1-206ENST00000405805 CD209Q9NNX6 404 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 RGL1Q9NZL6 768 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 DAAM1Q9Y4D1 1078 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 GPSM2P81274 684 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 PTK2Q05397 1052 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 NBPF20Q3BBV1 942 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 SEL1L2Q5TEA6 688 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 VSIG1Q86XK7 387 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 FAM178BQ8IXR5 827 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 CASKIN2Q8WXE0 1202 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 ARHGEF2Q92974 986 aaKnown RBP12.93□□□□□ -0.34
HMGB1-206ENST00000405805 TLR10Q9BXR5 811 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 DBNDD1Q9H9R9 158 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 RHBDL2Q9NX52 303 aa12.93□□□□□ -0.34
HMGB1-206ENST00000405805 CHCHD3Q9NX63 227 aaKnown RBP12.93□□□□□ -0.34
HMGB1-206ENST00000405805 SNUPNO95149 360 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ACSL3O95573 720 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 GRB10Q13322 594 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 SLFN13Q68D06 897 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 MIEF2Q96C03 454 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ATP6V1G3Q96LB4 118 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 INTS9Q9NV88 658 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 FAM53CQ9NYF3 392 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 CEP72Q9P209 647 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 SERPINB13Q9UIV8 391 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 HNRNPCP07910 306 aaKnown RBP eCLIP12.92□□□□□ -0.344e-6■□□□□ 10.4
HMGB1-206ENST00000405805 ODR4Q5SWX8 454 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 GDAP1Q8TB36 358 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 FMO2Q99518 471 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 MAGEF1Q9HAY2 307 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ANAPC4Q9UJX5 808 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 NOC2LQ9Y3T9 749 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 AFDNP55196 1824 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 TXNDC9O14530 226 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 CTNNA2P26232 953 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 PARP9Q8IXQ6 854 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 FAM186BQ8IYM0 893 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ZNF473Q8WTR7 871 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 IFT74Q96LB3 600 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ERGIC2Q96RQ1 377 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 C7orf25Q9BPX7 421 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 QTRT2Q9H974 415 aaKnown RBP12.92□□□□□ -0.34
HMGB1-206ENST00000405805 SH3GLB2Q9NR46 395 aa12.92□□□□□ -0.34
HMGB1-206ENST00000405805 ARHGEF35A5YM69 484 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 KLRC4O43908 158 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 ADGRF4Q8IZF3 695 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 GLG1Q92896 1179 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 ETAA1Q9NY74 926 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 SALL4Q9UJQ4 1053 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 GNA14O95837 355 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 GBP1P32455 592 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 LAMB3Q13751 1172 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 ZNF507Q8TCN5 953 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 TAF1DQ9H5J8 278 aaPredicted RBP12.91□□□□□ -0.34
HMGB1-206ENST00000405805 GOLGA8IPA6NC78 632 aa12.91□□□□□ -0.34
HMGB1-206ENST00000405805 GOLGA8JA6NMD2 632 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms