RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 LTBP1Q14766 1721 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 LTBP4Q8N2S1 1624 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 KIAA0754O94854 1291 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 RPA1P27694 616 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 JAG1P78504 1218 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 CTTNQ14247 550 aaKnown RBP22.52■■□□□ 1.2
CLK3-202ENST00000395066 ZC2HC1CQ53FD0 456 aaPredicted RBP22.52■■□□□ 1.2
CLK3-202ENST00000395066 PPP4R3CPQ6ZMV5 832 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 FRMD5Q7Z6J6 570 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 SPATS2Q86XZ4 545 aaKnown RBP22.52■■□□□ 1.2
CLK3-202ENST00000395066 METTL13Q8N6R0 699 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 LRRC57Q8N9N7 239 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 SLC35C1Q96A29 364 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 DNAJC5Q9H3Z4 198 aa22.52■■□□□ 1.2
CLK3-202ENST00000395066 CHMP2AO43633 222 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 GFPT2O94808 682 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 CLSTN1O94985 981 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 ADRA2BP18089 450 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 LSP1P33241 339 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 COG2Q14746 738 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 KCNV1Q6PIU1 500 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 MREGQ8N565 214 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 PLAAQ9Y263 795 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 SPDYE3A6NKU9 549 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 F5H6K3 240 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 ECHS1P30084 290 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 NMT1P30419 496 aaKnown RBP22.51■■□□□ 1.19
CLK3-202ENST00000395066 ICA1Q05084 483 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 KLRC3Q07444 240 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 CNPY4Q8N129 248 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 OTUD6BQ8N6M0 293 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 GEMIN8Q9NWZ8 242 aaKnown RBP22.51■■□□□ 1.19
CLK3-202ENST00000395066 TMEM59LQ9UK28 342 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 BCS1LQ9Y276 419 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 CAPN7Q9Y6W3 813 aa22.51■■□□□ 1.19
CLK3-202ENST00000395066 ATAD5Q96QE3 1844 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 GREB1LQ9C091 1923 aaPredicted RBP22.5■■□□□ 1.19
CLK3-202ENST00000395066 HOXA7P31268 230 aaPredicted RBP22.5■■□□□ 1.19
CLK3-202ENST00000395066 TNNC1P63316 161 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 CEP85LQ5SZL2 805 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 CD302Q8IX05 232 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 TPCN2Q8NHX9 752 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 U2AF1L4Q8WU68 220 aaKnown RBP22.5■■□□□ 1.19
CLK3-202ENST00000395066 NAP1L4Q99733 375 aaKnown RBP22.5■■□□□ 1.19
CLK3-202ENST00000395066 EPN3Q9H201 632 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 NOC2LQ9Y3T9 749 aaKnown RBP22.5■■□□□ 1.19
CLK3-202ENST00000395066 MYO3BQ8WXR4 1341 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 UBR3Q6ZT12 1888 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 OPLAHO14841 1288 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 NR1D1P20393 614 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 USP8P40818 1118 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 UBXN2AP68543 259 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 AMNQ9BXJ7 453 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 PLCB1Q9NQ66 1216 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 FAM198AQ9UFP1 575 aa22.5■■□□□ 1.19
CLK3-202ENST00000395066 DDX3XO00571 662 aaKnown RBP eCLIP22.49■■□□□ 1.19
CLK3-202ENST00000395066 MEFVO15553 781 aaPredicted RBP22.49■■□□□ 1.19
CLK3-202ENST00000395066 HPDP32754 393 aaPredicted RBP22.49■■□□□ 1.19
CLK3-202ENST00000395066 FLT3P36888 993 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 EMC10Q5UCC4 262 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 PRPF38AQ8NAV1 312 aaKnown RBP22.49■■□□□ 1.19
CLK3-202ENST00000395066 ERMNQ8TAM6 284 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 OSGEPQ9NPF4 335 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 VAV3Q9UKW4 847 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 CALUO43852 315 aaPredicted RBP22.49■■□□□ 1.19
CLK3-202ENST00000395066 FBXO11Q86XK2 927 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 EIF2AK1Q9BQI3 630 aaKnown RBP22.49■■□□□ 1.19
CLK3-202ENST00000395066 AMACRQ9UHK6 382 aa22.49■■□□□ 1.19
CLK3-202ENST00000395066 PDXKO00764 312 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 SART1O43290 800 aaKnown RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 TGFB1I1O43294 461 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 TBCAO75347 108 aaKnown RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 NDUFB10O96000 172 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 MNAT1P51948 309 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 SEC24CP53992 1094 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 NAA35Q5VZE5 725 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 CCDC17Q96LX7 622 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 NCAPGQ9BPX3 1015 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 CELF4Q9BZC1 486 aaKnown RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 TAF1DQ9H5J8 278 aaPredicted RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 TYW1Q9NV66 732 aaKnown RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 RABGAP1Q9Y3P9 1069 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 ZNF76P36508 570 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 AP3B2Q13367 1082 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 HHIPL2Q6UWX4 724 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 PEX26Q7Z412 305 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 DAAM2Q86T65 1068 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 WHAMMQ8TF30 809 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 DCAF4Q8WV16 495 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 ZNF219Q9P2Y4 722 aaPredicted RBP22.48■■□□□ 1.19
CLK3-202ENST00000395066 SUGT1Q9Y2Z0 365 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 SIPA1L1O43166 1804 aa22.48■■□□□ 1.19
CLK3-202ENST00000395066 SRCAPQ6ZRS2 3230 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 PPP1R37O75864 691 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 ZBTB48P10074 688 aaPredicted RBP22.47■■□□□ 1.19
CLK3-202ENST00000395066 Q4G0T1 1027 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 SAMD1Q6SPF0 538 aaPredicted RBP22.47■■□□□ 1.19
CLK3-202ENST00000395066 MICALCLQ6ZW33 695 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 ADAT2Q7Z6V5 191 aaKnown RBP22.47■■□□□ 1.19
CLK3-202ENST00000395066 SCFD2Q8WU76 684 aa22.47■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms