RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 FAM102BQ5T8I3 360 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 WDR78Q5VTH9 848 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 EEPD1Q7L9B9 569 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TRIM59Q8IWR1 403 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 CEP63Q96MT8 703 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 TUFT1Q9NNX1 390 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 CDC23Q9UJX2 597 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 PCDHA13Q9Y5I0 950 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 EFCAB8A8MWE9 144 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 EXOC3O60645 756 aa12.23□□□□□ -0.45
TCOF1-203ENST00000394269 MRPS25P82663 173 aaKnown RBP12.23□□□□□ -0.45
TCOF1-203ENST00000394269 ZNF185O15231 689 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 CLSTN1O94985 981 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 GNA14O95837 355 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 HSD17B4P51659 736 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 CLCN6P51797 869 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 KLHL30Q0D2K2 578 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 PGM5Q15124 567 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 EXOC3L4Q17RC7 722 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 AS3MTQ9HBK9 375 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 MYO6Q9UM54 1294 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 CD2APQ9Y5K6 639 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 SLC9C1Q4G0N8 1177 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 GOLGA1Q92805 767 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 SECISBP2LQ93073 1101 aaKnown RBP12.22□□□□□ -0.45
TCOF1-203ENST00000394269 PAGR1Q9BTK6 254 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 KIFC3Q9BVG8 833 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 TYW1Q9NV66 732 aaKnown RBP12.22□□□□□ -0.45
TCOF1-203ENST00000394269 SEPT11Q9NVA2 429 aaKnown RBP12.22□□□□□ -0.45
TCOF1-203ENST00000394269 TELO2Q9Y4R8 837 aa12.22□□□□□ -0.45
TCOF1-203ENST00000394269 AFPP02771 609 aaKnown RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 P4HBP07237 508 aaKnown RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 PEX3P56589 373 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 RNASE9P60153 205 aaKnown RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 MAP3K10Q02779 954 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 MEA1Q16626 185 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 UGCGQ16739 394 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 TMCO3Q6UWJ1 677 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 NLRX1Q86UT6 975 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 FAM186BQ8IYM0 893 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 PDCD2LQ9BRP1 358 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 AGO4Q9HCK5 861 aaKnown RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 ARGLU1Q9NWB6 273 aaPredicted RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 GPRC5DQ9NZD1 345 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 STK24Q9Y6E0 443 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 FRMD3A2A2Y4 597 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 GOLGA8IPA6NC78 632 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 GOLGA8JA6NMD2 632 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 PDXKO00764 312 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 BACH1O14867 736 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 TGFB1I1O43294 461 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 NR3C2P08235 984 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 QARSP47897 775 aaKnown RBP12.21□□□□□ -0.45
TCOF1-203ENST00000394269 PDXDC1Q6P996 788 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 MOB2Q70IA6 237 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 CCDC170Q8IYT3 715 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 PARD6BQ9BYG5 372 aa12.21□□□□□ -0.45
TCOF1-203ENST00000394269 ASTN1O14525 1302 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 CTAGE15A4D2H0 777 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 TMCO5BA8MYB1 307 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 EIF3CLB5ME19 914 aaKnown RBP12.21□□□□□ -0.46
TCOF1-203ENST00000394269 ADM5C9JUS6 153 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 SLC16A4O15374 487 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 PPP1R12BO60237 982 aaPredicted RBP12.21□□□□□ -0.46
TCOF1-203ENST00000394269 NOL4O94818 638 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 CTAGE8P0CG41 777 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 YWHABP31946 246 aaKnown RBP12.21□□□□□ -0.46
TCOF1-203ENST00000394269 EDRF1Q3B7T1 1238 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 ZNF720Q7Z2F6 126 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 CTAGE6Q86UF2 777 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 CTAGE4Q8IX94 777 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 BAP1Q92560 729 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 RIT2Q99578 217 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 EIF3CQ99613 913 aaKnown RBP12.21□□□□□ -0.46
TCOF1-203ENST00000394269 GBP3Q9H0R5 595 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 PLEKHA4Q9H4M7 779 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 GCNT4Q9P109 453 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 FRMD4BQ9Y2L6 1034 aa12.21□□□□□ -0.46
TCOF1-203ENST00000394269 PLA2G6O60733 806 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 FECHP22830 423 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 TMEM132BQ14DG7 1078 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 ANKRD35Q8N283 1001 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 PXMP2Q9NR77 195 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 RNF181Q9P0P0 153 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 FHOD1Q9Y613 1164 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 DCAF8L1A6NGE4 600 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 NCK2O43639 380 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 ZMYND10O75800 440 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 GAP43P17677 238 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 USP8P40818 1118 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 ARHGAP44Q17R89 818 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 SWSAP1Q6NVH7 229 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 GADL1Q6ZQY3 521 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 SEPT14Q6ZU15 432 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 SRGAP1Q7Z6B7 1085 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 ELMO3Q96BJ8 720 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 LARSQ9P2J5 1176 aaKnown RBP12.2□□□□□ -0.46
TCOF1-203ENST00000394269 USP20Q9Y2K6 914 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 SAR1BQ9Y6B6 198 aa12.2□□□□□ -0.46
TCOF1-203ENST00000394269 A0A1W2PQJ5 194 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms