RNA–Protein interactions for RNA: ENST00000384622.1

RNU6-540P-201, Transcript of RNA, U6 small nuclear 540, pseudogene, humanhuman

BASIC

Gene RNU6-540P, Length 101 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-540P-201ENST00000384622 MMP13P45452 471 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 PTTG1IPP53801 180 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 GRM1Q13255 1194 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 ZNF585BQ52M93 769 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 AMER1Q5JTC6 1135 aaPredicted RBP0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 RHBDF2Q6PJF5 856 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 TACO1Q9BSH4 297 aaKnown RBP0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 GATA5Q9BWX5 397 aaPredicted RBP0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 IL17RBQ9NRM6 502 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 ZNF652Q9Y2D9 606 aa0.56□□□□□ -2.32
RNU6-540P-201ENST00000384622 TCRBV5S2A0A599 114 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 MAN2B1O00754 1011 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 TRIM24O15164 1050 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 DNAJA2O60884 412 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 OAZ2O95190 189 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 CD1AP06126 327 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 ETV4P43268 484 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 RPS26P62854 115 aaKnown RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 GUCY1B3Q02153 619 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 RABEP1Q15276 862 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 NOL9Q5SY16 702 aaKnown RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 DIEXFQ68CQ4 756 aaKnown RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 RCSD1Q6JBY9 416 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 NEK8Q86SG6 692 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 PROSER1Q86XN7 944 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 TEX2Q8IWB9 1127 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 ELOA2Q8IYF1 753 aaPredicted RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 MB21D1Q8N884 522 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 WIPF2Q8TF74 440 aaPredicted RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 JARID2Q92833 1246 aaPredicted RBP0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 RHOVQ96L33 236 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 SLC46A2Q9BY10 475 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 OR10A2Q9H208 303 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 BTG4Q9NY30 223 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 HSPBP1Q9NZL4 362 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 PRO0461Q9UI25 63 aa0.55□□□□□ -2.32
RNU6-540P-201ENST00000384622 NPHP3-ACAD11A0A0J9YXS1 232 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 HGSO14964 777 aaPredicted RBP0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 MFAP3LO75121 409 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 NDUFA10O95299 355 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 IL18BPO95998 194 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 KCNQ1P51787 676 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 FAM189BP81408 668 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 HGFACQ04756 655 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 LRRC41Q15345 812 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 ARSHQ5FYA8 562 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 CFAP70Q5T0N1 1121 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 PXDC1Q5TGL8 231 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 MROH9Q5TGP6 573 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 C1QL3Q5VWW1 255 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 LARP4Q71RC2 724 aaKnown RBP eCLIP0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 IRF2BP2Q7Z5L9 587 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 STK32AQ8WU08 396 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 CLP1Q92989 425 aaKnown RBP0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 GLMNQ92990 594 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 VPS16Q9H269 839 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 BRPF3Q9ULD4 1205 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 ZMIZ1Q9ULJ6 1067 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 PCDHB4Q9Y5E5 795 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 MAST3O60307 1309 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 CACNA1IQ9P0X4 2223 aa0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 FCGBPQ9Y6R7 5405 aaPredicted RBP0.54□□□□□ -2.32
RNU6-540P-201ENST00000384622 UNC119BA6NIH7 251 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ARID3CA6NKF2 412 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SEC24DO94855 1032 aaPredicted RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 HTR3BO95264 441 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ENO2P09104 434 aaPredicted RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 PAMP19021 973 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 TCEA1P23193 301 aaKnown RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ATP2B4P23634 1241 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SEPHS1P49903 392 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 MRE11P49959 708 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 MEOX1P50221 254 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SLC10A2Q12908 348 aaPredicted RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SAFB2Q14151 953 aaKnown RBP eCLIP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 MCM6Q14566 821 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 NAIF1Q69YI7 327 aaPredicted RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 FAM111BQ6SJ93 734 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SV2BQ7L1I2 683 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 YTHDF3Q7Z739 585 aaKnown RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 FILIP1Q7Z7B0 1213 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 RIOX2Q8IUF8 465 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ANKRD24Q8TF21 1146 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 RABGGTAQ92696 567 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 NKD1Q969G9 470 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ARMC5Q96C12 935 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ZNF524Q96C55 264 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 POM121Q96HA1 1249 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 UROC1Q96N76 676 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 TMEM79Q9BSE2 394 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 ZDHHC5Q9C0B5 715 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SEMA4CQ9C0C4 833 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 NIF3L1Q9GZT8 377 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 AKIP1Q9NQ31 210 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 TRMT13Q9NUP7 481 aaKnown RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 TUBA8Q9NY65 449 aaPredicted RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 EIF2B4Q9UI10 523 aaKnown RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 FAM184BQ9ULE4 1060 aa0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 SF3B6Q9Y3B4 125 aaKnown RBP0.53□□□□□ -2.32
RNU6-540P-201ENST00000384622 PRR36Q9H6K5 1346 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms