RNA–Protein interactions for RNA: ENST00000379433.5

NEDD9-201, Transcript of neural precursor cell expressed, developmentally down-regulated 9, humanhuman

TSL 1 (best) BASIC

Gene NEDD9, Length 3,341 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD9-201ENST00000379433 NPEPPSP55786 919 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 FKBP3Q00688 224 aaKnown RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 EAPPQ56P03 285 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ICE2Q659A1 982 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 CCDC70Q6NSX1 233 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 GUF1Q8N442 669 aaKnown RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF397Q8NF99 534 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 MORC2Q9Y6X9 1032 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 IGLV3-22A0A075B6J6 115 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 CCDC189A1A4V9 331 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ARHGEF35A5YM69 484 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 LRRC10BA6NIK2 292 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 LRRC53A6NM62 1247 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ADM5C9JUS6 153 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ATP9AO75110 1047 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 MTMR1Q13613 665 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 RNF207Q6ZRF8 634 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 TMTC1Q8IUR5 882 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 PHC3Q8NDX5 983 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 KIFC3Q9BVG8 833 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 NHEJ1Q9H9Q4 299 aaPredicted RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 RNF181Q9P0P0 153 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF232Q9UNY5 417 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 COL4A3BPQ9Y5P4 624 aa11.86□□□□□ -0.51
NEDD9-201ENST00000379433 TNS1Q9HBL0 1735 aaKnown RBP11.86□□□□□ -0.51
NEDD9-201ENST00000379433 ABL2P42684 1182 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 BTNL9Q6UXG8 535 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 NEK11Q8NG66 645 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RNF146Q9NTX7 359 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 VAV3Q9UKW4 847 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RABL2BQ9UNT1 228 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 ZBED4O75132 1171 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RHOXF2BP0C7M4 288 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 MATR3P43243 847 aaKnown RBP eCLIP11.85□□□□□ -0.514e-6■□□□□ 8.9
NEDD9-201ENST00000379433 HIRAP54198 1017 aaPredicted RBP11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RNASE9P60153 205 aaKnown RBP11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RINT1Q6NUQ1 792 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 GJB7Q6PEY0 223 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 WDR59Q6PJI9 974 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 FAM160B2Q86V87 743 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF507Q8TCN5 953 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 FAM84AQ96KN4 292 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 FAM20AQ96MK3 541 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RHOXF2Q9BQY4 288 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 FHDC1Q9C0D6 1143 aaPredicted RBP11.85□□□□□ -0.51
NEDD9-201ENST00000379433 LACRTQ9GZZ8 138 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF536O15090 1300 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 SIPA1L1O43166 1804 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 RASSF10A6NK89 507 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 CETN3O15182 167 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 BUB1O43683 1085 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 FAM178BQ8IXR5 827 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 TEKT3Q9BXF9 490 aa11.85□□□□□ -0.51
NEDD9-201ENST00000379433 KIF2AO00139 706 aaPredicted RBP11.84□□□□□ -0.51
NEDD9-201ENST00000379433 ICAM1P05362 532 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 CXCR5P32302 372 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 GFPT1Q06210 699 aaPredicted RBP11.84□□□□□ -0.51
NEDD9-201ENST00000379433 GADL1Q6ZQY3 521 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 OTUD5Q96G74 571 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 NAP1L4Q99733 375 aaKnown RBP11.84□□□□□ -0.51
NEDD9-201ENST00000379433 JADE2Q9NQC1 790 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 SEPT11Q9NVA2 429 aaKnown RBP11.84□□□□□ -0.51
NEDD9-201ENST00000379433 CALCOCO1Q9P1Z2 691 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 RCCD1A6NED2 376 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 CCDC169A6NNP5 214 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 TRIM49P0CI25 452 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 TRIM49CP0CI26 452 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 SLC9A1P19634 815 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 CHMP4BP1P59074 171 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 PPP2R3AQ06190 1150 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 MAN2A1Q16706 1144 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 Q4G0T1 1027 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 LRRC55Q6ZSA7 311 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 FAM133AQ8N9E0 248 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 ZNF280CQ8ND82 737 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 MED4Q9NPJ6 270 aa11.84□□□□□ -0.51
NEDD9-201ENST00000379433 GOLGA8IPA6NC78 632 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 GOLGA8JA6NMD2 632 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 TMCO5BA8MYB1 307 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 CTNND1O60716 968 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 PARNO95453 639 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 EIF4A3P38919 411 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 SPA17Q15506 151 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 FBXO38Q6PIJ6 1188 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 SYT2Q8N9I0 419 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 SYTL5Q8TDW5 730 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 ZNF668Q96K58 619 aaPredicted RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 EHMT1Q9H9B1 1298 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 CHCHD3Q9NX63 227 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 ZC3H4Q9UPT8 1303 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 CYP3A7-CYP3A51PA0A087WV96 503 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 BACH1O14867 736 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 SEC31AO94979 1220 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 FGFR1OPO95684 399 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 PTPRAP18433 802 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 CYP3A7P24462 503 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 FLT3P36888 993 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 BACE1P56817 501 aa11.83□□□□□ -0.52
NEDD9-201ENST00000379433 MRPS9P82933 396 aaKnown RBP11.83□□□□□ -0.52
NEDD9-201ENST00000379433 KCNH2Q12809 1159 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms