RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 OLFML2BQ68BL8 750 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 SFR1Q86XK3 245 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 AFAP1L1Q8TED9 768 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 CCDC43Q96MW1 224 aaKnown RBP20.64■□□□□ 0.9
CLN3-206ENST00000360019 FANCLQ9NW38 375 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 CEP350Q5VT06 3117 aa20.64■□□□□ 0.9
CLN3-206ENST00000360019 SFI1A8K8P3 1242 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 USO1O60763 962 aaKnown RBP20.64■□□□□ 0.89
CLN3-206ENST00000360019 TRPA1O75762 1119 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 ZNF131P52739 623 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 MAPK7Q13164 816 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 STIM1Q13586 685 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 LRRC41Q15345 812 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 CCDC144BQ3MJ40 725 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 XKR3Q5GH77 459 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 PRAMEF19Q5SWL8 479 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 OTUD6AQ7L8S5 288 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 DAW1Q8N136 415 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 SEPT9Q9UHD8 586 aaPredicted RBP20.64■□□□□ 0.89
CLN3-206ENST00000360019 ODF2LQ9ULJ1 636 aa20.64■□□□□ 0.89
CLN3-206ENST00000360019 PSMA7O14818 248 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 ADCY6O43306 1168 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 HIP1RO75146 1068 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 LGR5O75473 907 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 GH1P01241 217 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 OATP04181 439 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 SMPD1P17405 629 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 STAT5BP51692 787 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 LAMC2Q13753 1193 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 ANP32BQ92688 251 aaKnown RBP20.63■□□□□ 0.89
CLN3-206ENST00000360019 EMID1Q96A84 441 aaPredicted RBP20.63■□□□□ 0.89
CLN3-206ENST00000360019 CEP170P1Q96L14 293 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 GABRQQ9UN88 632 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 COL4A3BPQ9Y5P4 624 aa20.63■□□□□ 0.89
CLN3-206ENST00000360019 TRIM49BA6NDI0 452 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 FAM13AO94988 1023 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 ZNF865P0CJ78 1059 aaPredicted RBP20.62■□□□□ 0.89
CLN3-206ENST00000360019 PPP1R2P41236 205 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 SP3Q02447 781 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 DUSP28Q4G0W2 176 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 SPATA1Q5VX52 437 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 FAM160B1Q5W0V3 765 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 TRIM50Q86XT4 487 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 GUF1Q8N442 669 aaKnown RBP20.62■□□□□ 0.89
CLN3-206ENST00000360019 DHTKD1Q96HY7 919 aaPredicted RBP20.62■□□□□ 0.89
CLN3-206ENST00000360019 PARVGQ9HBI0 331 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 ARID2Q68CP9 1835 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 ADCY5O95622 1261 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 ATP1A3P13637 1013 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 GAP43P17677 238 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 CASP5P51878 434 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 TPM4P67936 248 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 IRF5Q13568 498 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 SARM1Q6SZW1 724 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 MAEAQ7L5Y9 396 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 AZI2Q9H6S1 392 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 CYP26B1Q9NR63 512 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 OLFML3Q9NRN5 406 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 SAMSN1Q9NSI8 373 aaKnown RBP20.62■□□□□ 0.89
CLN3-206ENST00000360019 THSD7BQ9C0I4 1608 aa20.62■□□□□ 0.89
CLN3-206ENST00000360019 EMSYQ7Z589 1322 aa20.61■□□□□ 0.89
CLN3-206ENST00000360019 ZNF18P17022 549 aa20.61■□□□□ 0.89
CLN3-206ENST00000360019 IQSEC1Q6DN90 963 aa20.61■□□□□ 0.89
CLN3-206ENST00000360019 FIZ1Q96SL8 496 aa20.61■□□□□ 0.89
CLN3-206ENST00000360019 XRCC5P13010 732 aaKnown RBP20.6■□□□□ 0.89
CLN3-206ENST00000360019 CCNE1P24864 410 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 FLT3LGP49771 235 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 PRKCZQ05513 592 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 HSP90AA4PQ58FG1 418 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 TTI2Q6NXR4 508 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 MYOCDQ8IZQ8 938 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 MYCT1Q8N699 235 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 PPTC7Q8NI37 304 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 AFG1LQ8WV93 481 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 SCFD1Q8WVM8 642 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 P2RX5Q93086 422 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 PDLIM2Q96JY6 352 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 SEMA6BQ9H3T3 888 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 MTERF2Q49AM1 385 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 CENPPQ6IPU0 288 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 EPM2AIP1Q7L775 607 aaPredicted RBP20.6■□□□□ 0.89
CLN3-206ENST00000360019 PLPPR4Q7Z2D5 763 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 GLG1Q92896 1179 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 TIPINQ9BVW5 301 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 NIFKQ9BYG3 293 aaKnown RBP20.6■□□□□ 0.89
CLN3-206ENST00000360019 MRPL44Q9H9J2 332 aaKnown RBP20.6■□□□□ 0.89
CLN3-206ENST00000360019 GPRC5CQ9NQ84 441 aa20.6■□□□□ 0.89
CLN3-206ENST00000360019 NKRFO15226 690 aaKnown RBP eCLIP20.59■□□□□ 0.89
CLN3-206ENST00000360019 MYBP10242 640 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 MARK3P27448 753 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 TNFAIP2Q03169 654 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 CEP89Q96ST8 783 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 DUSP9Q99956 384 aaKnown RBP20.59■□□□□ 0.89
CLN3-206ENST00000360019 PDLIM7Q9NR12 457 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 SEL1LQ9UBV2 794 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 GNEQ9Y223 722 aaKnown RBP20.59■□□□□ 0.89
CLN3-206ENST00000360019 BRCA2P51587 3418 aa20.59■□□□□ 0.89
CLN3-206ENST00000360019 DGAT1O75907 488 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 CDKAL1Q5VV42 579 aa20.58■□□□□ 0.89
CLN3-206ENST00000360019 ANKRD40Q6AI12 368 aa20.58■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms