RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 HIP1RO75146 1068 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 CDK11BP21127 795 aaKnown RBP20.69■□□□□ 0.9
CLN3-204ENST00000357857 TCF7P36402 384 aaPredicted RBP20.69■□□□□ 0.9
CLN3-204ENST00000357857 RGS2P41220 211 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 ZNF131P52739 623 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 NPEPPSP55786 919 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 HSP90AA4PQ58FG1 418 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 TTI2Q6NXR4 508 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 MYCT1Q8N699 235 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 TRIM47Q96LD4 638 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 SPATA33Q96N06 139 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 PCYT2Q99447 389 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 SH2D3AQ9BRG2 576 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 TIPINQ9BVW5 301 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 FGFBP2Q9BYJ0 223 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 SEL1LQ9UBV2 794 aa20.69■□□□□ 0.9
CLN3-204ENST00000357857 SEPT9Q9UHD8 586 aaPredicted RBP20.69■□□□□ 0.9
CLN3-204ENST00000357857 SFI1A8K8P3 1242 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 KIF20AO95235 890 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 HSDL1Q3SXM5 330 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 TMEM63BQ5T3F8 832 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 CDKAL1Q5VV42 579 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 CENPPQ6IPU0 288 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 AFAP1L1Q8TED9 768 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 CEP170P1Q96L14 293 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 OLFML3Q9NRN5 406 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 IFNKQ9P0W0 207 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 ZSWIM8A7E2V4 1837 aa20.68■□□□□ 0.9
CLN3-204ENST00000357857 SERPINC1P01008 464 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 GH1P01241 217 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 OATP04181 439 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 STAT5BP51692 787 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 MAPK7Q13164 816 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ACVR2BQ13705 512 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ANKRD40Q6AI12 368 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 MRFAP1L1Q96HT8 127 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 SEMA6BQ9H3T3 888 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 MRPL44Q9H9J2 332 aaKnown RBP20.67■□□□□ 0.9
CLN3-204ENST00000357857 GJD2Q9UKL4 321 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 LGR5O75473 907 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ATP4AP20648 1035 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ADCYAP1R1P41586 468 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ARHGAP1Q07960 439 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 LAMC2Q13753 1193 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 MAEAQ7L5Y9 396 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ARHGAP30Q7Z6I6 1101 aaPredicted RBP20.67■□□□□ 0.9
CLN3-204ENST00000357857 DAW1Q8N136 415 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 SCFD1Q8WVM8 642 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 APBA2Q99767 749 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 DUSP9Q99956 384 aaKnown RBP20.67■□□□□ 0.9
CLN3-204ENST00000357857 AZI2Q9H6S1 392 aa20.67■□□□□ 0.9
CLN3-204ENST00000357857 ZHX1Q9UKY1 873 aaPredicted RBP20.67■□□□□ 0.9
CLN3-204ENST00000357857 CYP2B6P20813 491 aa20.66■□□□□ 0.9
CLN3-204ENST00000357857 CTGFP29279 349 aa20.66■□□□□ 0.9
CLN3-204ENST00000357857 CDC25BP30305 580 aa20.66■□□□□ 0.9
CLN3-204ENST00000357857 FCGRTP55899 365 aa20.66■□□□□ 0.9
CLN3-204ENST00000357857 EPM2AIP1Q7L775 607 aaPredicted RBP20.66■□□□□ 0.9
CLN3-204ENST00000357857 NOC3LQ8WTT2 800 aaKnown RBP20.66■□□□□ 0.9
CLN3-204ENST00000357857 XPO4Q9C0E2 1151 aaKnown RBP20.66■□□□□ 0.9
CLN3-204ENST00000357857 CYP26B1Q9NR63 512 aa20.66■□□□□ 0.9
CLN3-204ENST00000357857 CBFA2T2O43439 604 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 CASP5P51878 434 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 UBASH3AP57075 661 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 LRRC63Q05C16 580 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 IRF5Q13568 498 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 ODR4Q5SWX8 454 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 GJC2Q5T442 439 aaPredicted RBP20.65■□□□□ 0.9
CLN3-204ENST00000357857 OLFML2BQ68BL8 750 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 FOXR2Q6PJQ5 311 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 CSGALNACT2Q8N6G5 542 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 DRC1Q96MC2 740 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 TSG101Q99816 390 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 SRRTQ9BXP5 876 aaKnown RBP20.65■□□□□ 0.9
CLN3-204ENST00000357857 THAP9Q9H5L6 903 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 FLRT1Q9NZU1 646 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 EMSYQ7Z589 1322 aa20.65■□□□□ 0.9
CLN3-204ENST00000357857 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.64■□□□□ 0.9
CLN3-204ENST00000357857 DGAT1O75907 488 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 GCNT3O95395 438 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 MYBP10242 640 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 MTERF2Q49AM1 385 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 IQSEC1Q6DN90 963 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 NELFCDQ8IXH7 590 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 FAM178BQ8IXR5 827 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 GLG1Q92896 1179 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 EMID1Q96A84 441 aaPredicted RBP20.64■□□□□ 0.9
CLN3-204ENST00000357857 FAM167AQ96KS9 214 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 NIFKQ9BYG3 293 aaKnown RBP20.64■□□□□ 0.9
CLN3-204ENST00000357857 NRBP2Q9NSY0 501 aa20.64■□□□□ 0.9
CLN3-204ENST00000357857 LARSQ9P2J5 1176 aaKnown RBP20.64■□□□□ 0.9
CLN3-204ENST00000357857 PTGS1P23219 599 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 PSMC4P43686 418 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 LACTBP83111 547 aaPredicted RBP20.64■□□□□ 0.89
CLN3-204ENST00000357857 SPAG1Q07617 926 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 CCL14Q16627 93 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 BMT2Q1RMZ1 405 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 DUSP28Q4G0W2 176 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 FAM102BQ5T8I3 360 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 PLPPR4Q7Z2D5 763 aa20.64■□□□□ 0.89
CLN3-204ENST00000357857 DRC7Q8IY82 874 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms