RNA–Protein interactions for RNA: ENST00000355477.10

CLN3-202, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,173 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-202ENST00000355477 VCANP13611 3396 aa20.76■□□□□ 0.91
CLN3-202ENST00000355477 COL4A4P53420 1690 aaPredicted RBP20.76■□□□□ 0.91
CLN3-202ENST00000355477 NLRC5Q86WI3 1866 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 UPP2O95045 317 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 RPLP2P05387 115 aaKnown RBP20.75■□□□□ 0.91
CLN3-202ENST00000355477 CD52P31358 61 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 HTRA4P83105 476 aaPredicted RBP20.75■□□□□ 0.91
CLN3-202ENST00000355477 NR5A1Q13285 461 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 TSHZ1Q6ZSZ6 1077 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 NEK8Q86SG6 692 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 NME8Q8N427 588 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 CDHR5Q9HBB8 845 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 INSL6Q9Y581 213 aa20.75■□□□□ 0.91
CLN3-202ENST00000355477 LINC01553A4QN01 128 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 ENPP3O14638 875 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 C22orf31O95567 290 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 SFNP31947 248 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 JAK3P52333 1124 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 FOSBP53539 338 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 CCDC85BQ15834 202 aaPredicted RBP20.74■□□□□ 0.91
CLN3-202ENST00000355477 TNFRSF25Q93038 417 aa20.74■□□□□ 0.91
CLN3-202ENST00000355477 SPTBN5Q9NRC6 3674 aaKnown RBP20.74■□□□□ 0.91
CLN3-202ENST00000355477 KRT2P35908 639 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 PRKCEQ02156 737 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 KRT40Q6A162 431 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 PPP4R3AQ6IN85 833 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 MIER3Q7Z3K6 550 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 RTN4RL1Q86UN2 441 aaPredicted RBP20.73■□□□□ 0.91
CLN3-202ENST00000355477 KCNMB3Q9NPA1 279 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 SQORQ9Y6N5 450 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 KDM3AQ9Y4C1 1321 aa20.73■□□□□ 0.91
CLN3-202ENST00000355477 M0QZ92 97 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 CCNT1O60563 726 aaKnown RBP20.72■□□□□ 0.91
CLN3-202ENST00000355477 OATP04181 439 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 CCDC83Q8IWF9 413 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 METTL13Q8N6R0 699 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 RDM1Q8NG50 284 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 SP7Q8TDD2 431 aaPredicted RBP20.72■□□□□ 0.91
CLN3-202ENST00000355477 LINC01599Q8WXQ3 324 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 HAS1Q92839 578 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 FAM167AQ96KS9 214 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 PRDM6Q9NQX0 595 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 NRBP2Q9NSY0 501 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 MTUS1Q9ULD2 1270 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 PADI3Q9ULW8 664 aa20.72■□□□□ 0.91
CLN3-202ENST00000355477 BTBD18B2RXH4 712 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 EML1O00423 815 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 LPXNO60711 386 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 STBD1O95210 358 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 MMP1P03956 469 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 GCFC2P16383 781 aaKnown RBP20.71■□□□□ 0.91
CLN3-202ENST00000355477 POU3F3P20264 500 aaPredicted RBP20.71■□□□□ 0.91
CLN3-202ENST00000355477 RBM25P49756 843 aaKnown RBP20.71■□□□□ 0.91
CLN3-202ENST00000355477 ERVK-21P61565 698 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 TMEM266Q2M3C6 531 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 TMEM40Q8WWA1 233 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 FAM20AQ96MK3 541 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 TGS1Q96RS0 853 aaKnown RBP20.71■□□□□ 0.91
CLN3-202ENST00000355477 PPP1R16BQ96T49 567 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 VAV3Q9UKW4 847 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 CEP131Q9UPN4 1083 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 GINS2Q9Y248 185 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 MTCH2Q9Y6C9 303 aa20.71■□□□□ 0.91
CLN3-202ENST00000355477 VTNP04004 478 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 GRB10Q13322 594 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 EFCAB12Q6NXP0 572 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 POTEDQ86YR6 584 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 LINC01465Q8N7H1 131 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 YME1L1Q96TA2 773 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 C17orf80Q9BSJ5 609 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 SUGCTQ9HAC7 445 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 BRMS1Q9HCU9 246 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 NOC2LQ9Y3T9 749 aaKnown RBP20.7■□□□□ 0.9
CLN3-202ENST00000355477 RALGAPA2Q2PPJ7 1873 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 BRWD1Q9NSI6 2320 aa20.7■□□□□ 0.9
CLN3-202ENST00000355477 TMEM150BA6NC51 233 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 MAGEB2O15479 319 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 GPR32O75388 356 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 CLCN3P51790 818 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 PAK2Q13177 524 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 PPP2R5CQ13362 524 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 TARBP2Q15633 366 aaKnown RBP20.69■□□□□ 0.9
CLN3-202ENST00000355477 KIZQ2M2Z5 673 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 DIS3L2Q8IYB7 885 aaKnown RBP20.69■□□□□ 0.9
CLN3-202ENST00000355477 MICALL1Q8N3F8 863 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 LRRC71Q8N4P6 559 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 BANK1Q8NDB2 785 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 TMX1Q9H3N1 280 aa20.69■□□□□ 0.9
CLN3-202ENST00000355477 XIRP2A4UGR9 3374 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 TTC28Q96AY4 2481 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 COL4A6Q14031 1691 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 MYO7AQ13402 2215 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 WNT7AO00755 349 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 GUCY1B3Q02153 619 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 GDPD5Q8WTR4 605 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 ZSCAN31Q96LW9 406 aaPredicted RBP20.68■□□□□ 0.9
CLN3-202ENST00000355477 CEP89Q96ST8 783 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 NAP1L4Q99733 375 aaKnown RBP20.68■□□□□ 0.9
CLN3-202ENST00000355477 SH2D3AQ9BRG2 576 aa20.68■□□□□ 0.9
CLN3-202ENST00000355477 NIFKQ9BYG3 293 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms