RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 CEP55Q53EZ4 464 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 OGFOD1Q8N543 542 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 MS4A14Q96JA4 679 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 IKZF4Q9H2S9 585 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 VCPKMTQ9H867 229 aa23.87■■□□□ 1.41
SHMT1-202ENST00000352886 ZBTB12Q9Y330 459 aaPredicted RBP23.87■■□□□ 1.41
SHMT1-202ENST00000352886 MRPL11Q9Y3B7 192 aaKnown RBP23.87■■□□□ 1.41
SHMT1-202ENST00000352886 FTCDO95954 541 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 MIGA2Q7L4E1 593 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 ZNF571Q7Z3V5 609 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 PSD3Q9NYI0 1048 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 ZMYM2Q9UBW7 1377 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 MYH11P35749 1972 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 EIF3DO15371 548 aaKnown RBP eCLIP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 VIL1P09327 827 aaKnown RBP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 AARSP49588 968 aaKnown RBP eCLIP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 DNA2P51530 1060 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 ZC2HC1CQ53FD0 456 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 ZNF772Q68DY9 489 aaPredicted RBP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 GBP6Q6ZN66 633 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 RBM46Q8TBY0 533 aaKnown RBP23.86■■□□□ 1.41
SHMT1-202ENST00000352886 TMEM39BQ9GZU3 492 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 EHMT1Q9H9B1 1298 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 PARVGQ9HBI0 331 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 PCDHGC5Q9Y5F6 944 aa23.86■■□□□ 1.41
SHMT1-202ENST00000352886 SLC7A5Q01650 507 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 SLC15A2Q16348 729 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 SPDYE2Q495Y8 402 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 CFAP221Q4G0U5 840 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 GMLQ99445 158 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 ZNF577Q9BSK1 485 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 RBM12Q9NTZ6 932 aaKnown RBP23.85■■□□□ 1.41
SHMT1-202ENST00000352886 FBXO28Q9NVF7 368 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 GCNT4Q9P109 453 aa23.85■■□□□ 1.41
SHMT1-202ENST00000352886 WRAP73Q9P2S5 460 aaPredicted RBP23.85■■□□□ 1.41
SHMT1-202ENST00000352886 BZW2Q9Y6E2 419 aaKnown RBP23.85■■□□□ 1.41
SHMT1-202ENST00000352886 ZC3H4Q9UPT8 1303 aaKnown RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 SYF2O95926 243 aaKnown RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 ARP10275 920 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 LARGE2Q8N3Y3 721 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 AENQ8WTP8 325 aaKnown RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 UNC45AQ9H3U1 944 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 SIX2Q9NPC8 291 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 SHTN1A0MZ66 631 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 MEI1Q5TIA1 1274 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 KSR1Q8IVT5 923 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 RUBCNQ92622 972 aa23.84■■□□□ 1.41
SHMT1-202ENST00000352886 GLIS2Q9BZE0 524 aaPredicted RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 AJAP1Q9UKB5 411 aaPredicted RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 PACSIN2Q9UNF0 486 aaPredicted RBP23.84■■□□□ 1.41
SHMT1-202ENST00000352886 FRMPD4Q14CM0 1322 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 FAM160B2Q86V87 743 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 LDHDQ86WU2 507 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 BBXQ8WY36 941 aaPredicted RBP23.83■■□□□ 1.41
SHMT1-202ENST00000352886 BORCS6Q96GS4 357 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 WDR11Q9BZH6 1224 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 RNF14Q9UBS8 474 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 GRID2IPA4D2P6 1211 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 C10orf76Q5T2E6 689 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 C8orf74Q6P047 294 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 FAM186BQ8IYM0 893 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 NACC1Q96RE7 527 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 ZNF277Q9NRM2 450 aaPredicted RBP23.83■■□□□ 1.41
SHMT1-202ENST00000352886 STIM2Q9P246 746 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 FBXL5Q9UKA1 691 aa23.83■■□□□ 1.41
SHMT1-202ENST00000352886 PSMC2P35998 433 aaKnown RBP23.82■■□□□ 1.4
SHMT1-202ENST00000352886 SETQ01105 290 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-202ENST00000352886 COG2Q14746 738 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 GJB7Q6PEY0 223 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 FIZ1Q96SL8 496 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 COL4A5P29400 1685 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 PLA2G6O60733 806 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 RNF40O75150 1001 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 CAP2P40123 477 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 FAM178BQ8IXR5 827 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 NAGPAQ9UK23 515 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 FEM1BQ9UK73 627 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 RGPD3A6NKT7 1758 aaPredicted RBP23.82■■□□□ 1.4
SHMT1-202ENST00000352886 RGPD4Q7Z3J3 1758 aa23.82■■□□□ 1.4
SHMT1-202ENST00000352886 MUTP22033 750 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 PRKCIP41743 596 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 HNRNPH2P55795 449 aaKnown RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 JAM2P57087 298 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 TAF3Q5VWG9 929 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 ZNF720Q7Z2F6 126 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 RIN2Q8WYP3 895 aaPredicted RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 TEKT3Q9BXF9 490 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 GTPBP10A4D1E9 387 aaKnown RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 BTNL10A8MVZ5 291 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 IPO5O00410 1097 aaKnown RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 PPP1R12BO60237 982 aaPredicted RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 TBC1D12O60347 775 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 ZNF131P52739 623 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 ALKBH5Q6P6C2 394 aaKnown RBP23.81■■□□□ 1.4
SHMT1-202ENST00000352886 DNAAF5Q86Y56 855 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 RTKN2Q8IZC4 609 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 TTLL6Q8N841 843 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 LXNQ9BS40 222 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 FAM204AQ9H8W3 233 aa23.81■■□□□ 1.4
SHMT1-202ENST00000352886 CALCOCO1Q9P1Z2 691 aa23.81■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms