RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TEX2Q8IWB9 1127 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 TSTD1Q8NFU3 115 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 PUS3Q9BZE2 481 aaKnown RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 PFDN4Q9NQP4 134 aa9.15□□□□□ -0.94
HMGB1-203ENST00000341423 UXTQ9UBK9 157 aaPredicted RBP9.15□□□□□ -0.94
HMGB1-203ENST00000341423 BICDL2A1A5D9 508 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 PPP1R2P41236 205 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 MFSD10Q14728 455 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 NXF1Q9UBU9 619 aaKnown RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 MED23Q9ULK4 1368 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 LDHAP00338 332 aaKnown RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 RFC2P35250 354 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 HIRAP54198 1017 aaPredicted RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 USP4Q13107 963 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 TMEM132DQ14C87 1099 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 MAPRE1Q15691 268 aaKnown RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 TDRD10Q5VZ19 366 aaKnown RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 TRMT11Q7Z4G4 463 aaKnown RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF557Q8N988 423 aaPredicted RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 SUSD6Q92537 303 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 NKD2Q969F2 451 aaPredicted RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 ACDQ96AP0 544 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 DYNLL2Q96FJ2 89 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 CFAP57Q96MR6 1250 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 EXO5Q9H790 373 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 SUCLA2Q9P2R7 463 aaPredicted RBP9.15□□□□□ -0.95
HMGB1-203ENST00000341423 CLCA2Q9UQC9 943 aa9.15□□□□□ -0.95
HMGB1-203ENST00000341423 STAM2O75886 525 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 RXRAP19793 462 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 GPS2Q13227 327 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 GEN1Q17RS7 908 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 DCAF4L1Q3SXM0 396 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 PABPC1LQ4VXU2 614 aaKnown RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 USP39Q53GS9 565 aaKnown RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 LRRC4BQ9NT99 713 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 PNMA6FA0A0J9YX94 578 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 ATP2A1O14983 1001 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 FOXD2O60548 495 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 DGKEP52429 567 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 DDX23Q9BUQ8 820 aaKnown RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 ASXL1Q8IXJ9 1541 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 AP3B2Q13367 1082 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 PLEKHM2Q8IWE5 1019 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 DDX1Q92499 740 aaKnown RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 LRRC2Q9BYS8 371 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 PRDM12Q9H4Q4 367 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 B3GAT3O94766 335 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 MXD4Q14582 209 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 FBXO16Q8IX29 292 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 NUP88Q99567 741 aaPredicted RBP9.14□□□□□ -0.95
HMGB1-203ENST00000341423 GABBR1Q9UBS5 961 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 SUSD2Q9UGT4 822 aa9.14□□□□□ -0.95
HMGB1-203ENST00000341423 HSPA8P11142 646 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 RBMS1P29558 406 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 ZNF34Q8IZ26 560 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TNIP3Q96KP6 325 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 PLIN2Q99541 437 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 MSTO1Q9BUK6 570 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SLC38A10Q9HBR0 1119 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 ZCCHC17Q9NP64 241 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 PCDHA10Q9Y5I2 948 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TNKSO95271 1327 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 FGF19O95750 216 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 IRF1P10914 325 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SCG2P13521 617 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TRAPPC10P48553 1259 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 HARS2P49590 506 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 EFNA5P52803 228 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SNAP25P60880 206 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 BEX3Q00994 111 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 PDIA6Q15084 440 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 E4F1Q66K89 784 aaPredicted RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 NEK8Q86SG6 692 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 IQUBQ8NA54 791 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 CLMNQ96JQ2 1002 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 ZDHHC15Q96MV8 337 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.13□□□□□ -0.952e-6■□□□□ 10.8
HMGB1-203ENST00000341423 ABHD14A-ACY1A0A1B0GW23 586 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SLC4A1P02730 911 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 WEE1P30291 646 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 MTSS1LQ765P7 747 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 RASAL3Q86YV0 1011 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 NME8Q8N427 588 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 CPA6Q8N4T0 437 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 HPS3Q969F9 1004 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TSPYL1Q9H0U9 437 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 GPR108Q9NPR9 543 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 PCDHB3Q9Y5E6 796 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 RBM8AQ9Y5S9 174 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 H3BRB1 525 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SART1O43290 800 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 VAMP4O75379 141 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 PCDH8O95206 1070 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TTC39CQ8N584 583 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 NKX2-4Q9H2Z4 354 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TUT1Q9H6E5 874 aaKnown RBP9.13□□□□□ -0.95
HMGB1-203ENST00000341423 TRPV2Q9Y5S1 764 aa9.13□□□□□ -0.95
HMGB1-203ENST00000341423 SHTN1A0MZ66 631 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms