RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 KCNH2Q12809 1159 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 DLGAP5Q15398 846 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CAPRIN2Q6IMN6 1127 aaKnown RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 SMIM5Q71RC9 77 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 FAM161BQ96MY7 647 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 TRIM51Q9BSJ1 452 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 DBNDD1Q9H9R9 158 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 TXLNGQ9NUQ3 528 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 PCSK1NQ9UHG2 260 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ZMYM3Q14202 1370 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 WDR64B1ANS9 1081 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 SKAP2O75563 359 aaPredicted RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 CPP00450 1065 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 STMN1P16949 149 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 PPP2R2AP63151 447 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 HLFQ16534 295 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 SPOPLQ6IQ16 392 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MDM1Q8TC05 714 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 HSPH1Q92598 858 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ATXN7L3BQ96GX2 97 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CCDC138Q96M89 665 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CCT8L2Q96SF2 557 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 Q9H521 79 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CXorf56Q9H5V9 222 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 SH2D4AQ9H788 454 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 NGRNQ9NPE2 291 aaKnown RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 KLHL11Q9NVR0 708 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CCPG1Q9ULG6 757 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ZNF804BA4D1E1 1349 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MYO3AQ8NEV4 1616 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ZBED4O75132 1171 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 STAT3P40763 770 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MAP3K21Q5TCX8 1036 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 SLFN12Q8IYM2 578 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 SUDS3Q9H7L9 328 aaPredicted RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 SENP2Q9HC62 589 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 HESX1Q9UBX0 185 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MARCOQ9UEW3 520 aaPredicted RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 HEY1Q9Y5J3 304 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 POTEB3A0JP26 581 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 POTECB2RU33 542 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 GNGT2O14610 69 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 MAPK13O15264 365 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CARSP49589 748 aaKnown RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 BRDTQ58F21 947 aaPredicted RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 C1orf146Q5VVC0 180 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 POTEBQ6S5H4 581 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 RSPH3Q86UC2 560 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 TTLL11Q8NHH1 800 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ANKRD7Q92527 254 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 PBKQ96KB5 322 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 CEP170P1Q96L14 293 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 NUDCD1Q96RS6 583 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 KLF6Q99612 283 aaPredicted RBP9.34□□□□□ -0.91
RTN3-202ENST00000339997 TEKT3Q9BXF9 490 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 AMNQ9BXJ7 453 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 THAP9Q9H5L6 903 aa9.34□□□□□ -0.91
RTN3-202ENST00000339997 ABCC12Q96J65 1359 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PEX3P56589 373 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 FAM47CQ5HY64 1035 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 C6orf118Q5T5N4 469 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 RGS9BPQ6ZS82 235 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 CDC26Q8NHZ8 85 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 LRRC37BQ96QE4 947 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TGS1Q96RS0 853 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 PRMT1Q99873 361 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 C11orf70Q9BRQ4 267 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 ECT2Q9H8V3 914 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 CNOT10Q9H9A5 744 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 SUFUQ9UMX1 484 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TBX22Q9Y458 520 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 DUSP10Q9Y6W6 482 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PLEKHG3A1L390 1219 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TCP11X1B4DZS4 312 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PPIP5K2O43314 1243 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PPP1R37O75864 691 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 KDSRQ06136 332 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 SFR1Q86XK3 245 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 DNAAF5Q86Y56 855 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 KCTD6Q8NC69 237 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 SPIRE2Q8WWL2 714 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 RAPGEF5Q92565 580 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PNMA2Q9UL42 364 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 MYO5BQ9ULV0 1848 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TTI1O43156 1089 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PRPF3O43395 683 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 EIF2AK2P19525 551 aaKnown RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 LIFRP42702 1097 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PLA2G4AP47712 749 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 TRAPPC10P48553 1259 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 MECOMQ03112 1051 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 ART3Q13508 389 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 MTERF2Q49AM1 385 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 DNAJC24Q6P3W2 148 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 EPM2AIP1Q7L775 607 aaPredicted RBP9.33□□□□□ -0.92
RTN3-202ENST00000339997 ATP6V1G3Q96LB4 118 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 C9orf72Q96LT7 481 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 PNKPQ96T60 521 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 E2F8A0AVK6 867 aa9.33□□□□□ -0.92
RTN3-202ENST00000339997 POTEFA5A3E0 1075 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms