RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 ARMT1Q9H993 441 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 CCDC127Q96BQ5 260 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 SLC24A3Q9HC58 644 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 F8W031 263 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 RGS9BPQ6ZS82 235 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 OSBPL5Q9H0X9 879 aaPredicted RBP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 A2MP01023 1474 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 GOLGA8RI6L899 631 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 MAGOHP61326 146 aaKnown RBP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 NDUFAF2Q8N183 169 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 MCUQ8NE86 351 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 COG1Q8WTW3 980 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 CMTM5Q96DZ9 223 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 SOWAHDA6NJG2 315 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 ADCK1Q86TW2 530 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 TTC8Q8TAM2 541 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 FAM95CA0A1B0GW59 222 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 FOXO3O43524 673 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 PSMA3P25788 255 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 PPIL4Q8WUA2 492 aaKnown RBP eCLIP15.25■□□□□ 0.03
COL7A1-201ENST00000328333 RSPH1Q8WYR4 309 aa15.25■□□□□ 0.03
COL7A1-201ENST00000328333 WDR17Q8IZU2 1322 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 TLR3O15455 904 aaKnown RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 LAMC2Q13753 1193 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PHF21AQ96BD5 680 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CIITAP33076 1130 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SPDYE1Q8NFV5 336 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CEP95Q96GE4 821 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SNF8Q96H20 258 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 ELAC2Q9BQ52 826 aaKnown RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PLEKHA4Q9H4M7 779 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PLB1Q6P1J6 1458 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 MYBL1P10243 752 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 TECP42680 631 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SMYD3Q9H7B4 428 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PARVGQ9HBI0 331 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 GLG1Q92896 1179 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 TNNQ9UQP3 1299 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 POLR2MP0CAP2 368 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PSMA4P25789 261 aaKnown RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SLCO1A2P46721 670 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 C16orf89Q6UX73 402 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CEP72Q9P209 647 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 GGA1Q9UJY5 639 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 LZTS3O60299 673 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 MYCLP12524 364 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 KCNA3P22001 575 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CYTH1Q15438 398 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.24■□□□□ 0.037e-7■■■■■ 29.6
COL7A1-201ENST00000328333 AATFQ9NY61 560 aaKnown RBP eCLIP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SPDYE2BA6NHP3 402 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CTIFO43310 598 aaKnown RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 SPDYE6P0CI01 402 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PPP1R2P1Q96PQ5 205 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 TMEM245Q9H330 911 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 PARVBQ9HBI1 364 aa15.24■□□□□ 0.03
COL7A1-201ENST00000328333 BIN2Q9UBW5 565 aaPredicted RBP15.24■□□□□ 0.03
COL7A1-201ENST00000328333 CNGA2Q16280 664 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ARHGEF16Q5VV41 709 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 XPAP23025 273 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 EIF4A3P38919 411 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 GINS4Q9BRT9 223 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 PDCLQ13371 301 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ACBD5Q5T8D3 534 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 KHDRBS2Q5VWX1 349 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 SETD3Q86TU7 594 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 SNX25Q9H3E2 840 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 SLC39A2Q9NP94 309 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 SH3GLB2Q9NR46 395 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 NSFL1CQ9UNZ2 370 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ABCC10Q5T3U5 1492 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 PMS1P54277 932 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 NUP107P57740 925 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ZNF579Q8NAF0 562 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 TADA1Q96BN2 335 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ACCSQ96QU6 501 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 MBD2Q9UBB5 411 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 SPHKAPQ2M3C7 1700 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ZC3H12BQ5HYM0 836 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 WDR11Q9BZH6 1224 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 NSMCE4AQ9NXX6 385 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 RPAP1Q9BWH6 1393 aaPredicted RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ZNF280CQ8ND82 737 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 ABHD10Q9NUJ1 306 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 GOLGA8FQ08AF8 430 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 GOLGA8DPQ0D2H9 430 aa15.23■□□□□ 0.03
COL7A1-201ENST00000328333 BYSLQ13895 437 aaKnown RBP15.23■□□□□ 0.03
COL7A1-201ENST00000328333 TNRQ92752 1358 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 FMNL1O95466 1100 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-201ENST00000328333 LRIG3Q6UXM1 1119 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 NACC1Q96RE7 527 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 PCDHA5Q9Y5H7 936 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 PPP6R3Q5H9R7 873 aaPredicted RBP15.22■□□□□ 0.03
COL7A1-201ENST00000328333 DDI1Q8WTU0 396 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 CNPY3Q9BT09 278 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 TJAP1Q5JTD0 557 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 NFATC2IPQ8NCF5 419 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 HIC2Q96JB3 615 aa15.22■□□□□ 0.03
COL7A1-201ENST00000328333 CPSF3Q9UKF6 684 aaKnown RBP15.22■□□□□ 0.03
COL7A1-201ENST00000328333 USH1GQ495M9 461 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms