RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 RIN2Q8WYP3 895 aaPredicted RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 BTBD7Q9P203 1132 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 PRDM4Q9UKN5 801 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 SOX13Q9UN79 622 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 PRXQ9BXM0 1461 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 MAP3K10Q02779 954 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 COPS6Q7L5N1 327 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 MFN1Q8IWA4 741 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 FNDC3AQ9Y2H6 1198 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 SERPING1P05155 500 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 SCTRP47872 440 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 FAM102BQ5T8I3 360 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 CTIFO43310 598 aaKnown RBP12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 CACNA2D1P54289 1103 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 TBC1D22AQ8WUA7 517 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 CCDC127Q96BQ5 260 aa12.55□□□□□ -0.4
SHROOM3-201ENST00000296043 KPNA2P52292 529 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 CAPSLQ8WWF8 208 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SYBUQ9NX95 663 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 ATP1A1P05023 1023 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 HSPA9P38646 679 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 CLK1P49759 484 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 MECOMQ03112 1051 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 PBXIP1Q96AQ6 731 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SLC13A1Q9BZW2 595 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SUN2Q9UH99 717 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 CNTRLQ7Z7A1 2325 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SRGAP2BP0DMP2 458 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 HSPA6P17066 643 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 NCAPG2Q86XI2 1143 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 THTPAQ9BU02 230 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 PDZD4Q76G19 769 aaPredicted RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 GPKOWQ92917 476 aaPredicted RBP eCLIP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 A0A0D9SFI3 127 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 TRIM49P0CI25 452 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 TRIM49CP0CI26 452 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 BRAFP15056 766 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 AARSP49588 968 aaKnown RBP eCLIP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 TFAP4Q01664 338 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 C16orf72Q14CZ0 275 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 TAF1BQ53T94 588 aaPredicted RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SZRD1Q7Z422 152 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 KLHL23Q8NBE8 558 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 MOV10L1Q9BXT6 1211 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 TRABDQ9H4I3 376 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 P4HA1P13674 534 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 HADHAP40939 763 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 INPP5AQ14642 412 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 CDC25CP30307 473 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 RCSD1Q6JBY9 416 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 UTS2BQ765I0 119 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 ARHGEF25Q86VW2 580 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 ZNF786Q8N393 782 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 MCRS1Q96EZ8 462 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 BUD13Q9BRD0 619 aaKnown RBP eCLIP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 DDX18Q9NVP1 670 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 DCDC2Q9UHG0 476 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 GINS2Q9Y248 185 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 R3HDM2Q9Y2K5 976 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 ADARP55265 1226 aaKnown RBP12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 HIF1AQ16665 826 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 RIN3Q8TB24 985 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 SGSM3Q96HU1 749 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 ABCF3Q9NUQ8 709 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 RWDD3Q9Y3V2 267 aa12.54□□□□□ -0.4
SHROOM3-201ENST00000296043 MYCLP12524 364 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 IRAK1P51617 712 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 AKR1D1P51857 326 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 ARL4CP56559 192 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SEMA3FQ13275 785 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 RSBN1Q5VWQ0 802 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TBC1D9BQ66K14 1250 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SMCR8Q8TEV9 937 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 RWDD2AQ9UIY3 292 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 AKAP10O43572 662 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 CCDC81Q6ZN84 652 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 BHMT2Q9H2M3 363 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 GFPT1Q06210 699 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 THOC5Q13769 683 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 AHI1Q8N157 1196 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 PDIK1LQ8N165 341 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 PLCG2P16885 1265 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 AKIRIN2Q53H80 203 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TNNI3KQ59H18 835 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TTC33Q6PID6 262 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 LRRC31Q6UY01 552 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 NSMFQ6X4W1 530 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TMA16Q96EY4 203 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 IL1RAPL1Q9NZN1 696 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 HACD3Q9P035 362 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 FPGT-TNNI3KV9GXZ4 949 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 MYH7P12883 1935 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 TTC7AQ9ULT0 858 aaPredicted RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 NQO1P15559 274 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 PTGDRQ13258 359 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 ARMCX5Q6P1M9 558 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 NLRP9Q7RTR0 991 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 NOC2LQ9Y3T9 749 aaKnown RBP12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 ZWILCHQ9H900 591 aa12.53□□□□□ -0.4
SHROOM3-201ENST00000296043 SYCP2Q9BX26 1530 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms