RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 LRRC55Q6ZSA7 311 aa18.61■□□□□ 0.57
FOXA1-201ENST00000250448 CACNA2D4Q7Z3S7 1137 aa18.61■□□□□ 0.57
FOXA1-201ENST00000250448 PICK1Q9NRD5 415 aa18.61■□□□□ 0.57
FOXA1-201ENST00000250448 BUB1O43683 1085 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 ERLIN2O94905 339 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 VCAM1P19320 739 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 LIG3P49916 1009 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 CALCRLQ16602 461 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 CFAP221Q4G0U5 840 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 RNF10Q8N5U6 811 aaKnown RBP18.6■□□□□ 0.57
FOXA1-201ENST00000250448 KLRG1Q96E93 195 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 EDEM3Q9BZQ6 932 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 HMGCS2P54868 508 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 UBXN2AP68543 259 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 ORC2Q13416 577 aaPredicted RBP18.6■□□□□ 0.57
FOXA1-201ENST00000250448 IFT20Q8IY31 132 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 MS4A14Q96JA4 679 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 PNMA5Q96PV4 448 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 KIAA1683Q9H0B3 1180 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 A6NNZ2 444 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 TUBB8Q3ZCM7 444 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 TDRD12Q587J7 1177 aaKnown RBP18.6■□□□□ 0.57
FOXA1-201ENST00000250448 HGSNATQ68CP4 663 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 DYMQ7RTS9 669 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 LARP4BQ92615 738 aaKnown RBP18.6■□□□□ 0.57
FOXA1-201ENST00000250448 WNK4Q96J92 1243 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 RANBP17Q9H2T7 1088 aaKnown RBP18.6■□□□□ 0.57
FOXA1-201ENST00000250448 GDF3Q9NR23 364 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 HOMER2Q9NSB8 354 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 RNF14Q9UBS8 474 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 FEM1BQ9UK73 627 aa18.6■□□□□ 0.57
FOXA1-201ENST00000250448 POTEMA6NI47 508 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 FLOT1O75955 427 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 NAP1L1P55209 391 aaKnown RBP18.59■□□□□ 0.57
FOXA1-201ENST00000250448 PDCLQ13371 301 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 MOB2Q70IA6 237 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 DCPSQ96C86 337 aaKnown RBP18.59■□□□□ 0.57
FOXA1-201ENST00000250448 RPAP3Q9H6T3 665 aaPredicted RBP18.59■□□□□ 0.57
FOXA1-201ENST00000250448 DDX25Q9UHL0 483 aaKnown RBP18.59■□□□□ 0.57
FOXA1-201ENST00000250448 ZNF112Q9UJU3 913 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 RBAK-RBAKDNI3L0D1 243 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 MMS22LQ6ZRQ5 1243 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 LDHDQ86WU2 507 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 CDK5RAP3Q96JB5 506 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 CCDC43Q96MW1 224 aaKnown RBP18.59■□□□□ 0.57
FOXA1-201ENST00000250448 TSG101Q99816 390 aa18.59■□□□□ 0.57
FOXA1-201ENST00000250448 APBA1Q02410 837 aa18.58■□□□□ 0.57
FOXA1-201ENST00000250448 PAK2Q13177 524 aa18.58■□□□□ 0.57
FOXA1-201ENST00000250448 SULF1Q8IWU6 871 aa18.58■□□□□ 0.57
FOXA1-201ENST00000250448 SH2D3CQ8N5H7 860 aa18.58■□□□□ 0.57
FOXA1-201ENST00000250448 USP2O75604 605 aaPredicted RBP18.58■□□□□ 0.56
FOXA1-201ENST00000250448 HEXIM1O94992 359 aaKnown RBP18.58■□□□□ 0.56
FOXA1-201ENST00000250448 GLI1P08151 1106 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 ERCC3P19447 782 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 EAPPQ56P03 285 aaPredicted RBP18.58■□□□□ 0.56
FOXA1-201ENST00000250448 CFAP58Q5T655 872 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 FAM160B2Q86V87 743 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 SUGP1Q8IWZ8 645 aaKnown RBP18.58■□□□□ 0.56
FOXA1-201ENST00000250448 MTMR9Q96QG7 549 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 RAVER2Q9HCJ3 691 aaKnown RBP18.58■□□□□ 0.56
FOXA1-201ENST00000250448 SAMM50Q9Y512 469 aa18.58■□□□□ 0.56
FOXA1-201ENST00000250448 DOCK1Q14185 1865 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 SPDYE3A6NKU9 549 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 CLSTN1O94985 981 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 CARSP49589 748 aaKnown RBP18.57■□□□□ 0.56
FOXA1-201ENST00000250448 KCNMA1Q12791 1236 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 DPY19L2Q6NUT2 758 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 ZNF280CQ8ND82 737 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 CYP2W1Q8TAV3 490 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 KAT2BQ92831 832 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 NFU1Q9UMS0 254 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 WDR46O15213 610 aaKnown RBP18.57■□□□□ 0.56
FOXA1-201ENST00000250448 MARCH6O60337 910 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 FXR2P51116 673 aaKnown RBP eCLIP18.57■□□□□ 0.56
FOXA1-201ENST00000250448 BACE1P56817 501 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 ARHGAP4P98171 946 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 SLC9C1Q4G0N8 1177 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 SLC30A10Q6XR72 485 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 RAD54LQ92698 747 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 HAS1Q92839 578 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 HOOK2Q96ED9 719 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 NLRC4Q9NPP4 1024 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 CEP72Q9P209 647 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 CCPG1Q9ULG6 757 aa18.57■□□□□ 0.56
FOXA1-201ENST00000250448 NDUFAB1O14561 156 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 HOXA7P31268 230 aaPredicted RBP18.56■□□□□ 0.56
FOXA1-201ENST00000250448 TMEM266Q2M3C6 531 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 SUPT20HL1Q3ZLR7 823 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 KCTD16Q68DU8 428 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 EPB41L5Q9HCM4 733 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 ZNF536O15090 1300 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 ZSCAN5CA6NGD5 496 aaPredicted RBP18.56■□□□□ 0.56
FOXA1-201ENST00000250448 KRT14P02533 472 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 FAM153BP0C7A2 387 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 GUCY2CP25092 1073 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 ATP1A2P50993 1020 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 GUCY2DQ02846 1103 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 FAM153CQ494X1 144 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 SFMBT2Q5VUG0 894 aa18.56■□□□□ 0.56
FOXA1-201ENST00000250448 KDM7AQ6ZMT4 941 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms