RNA–Protein interactions for RNA: ENST00000641603.1

SCN1A-220, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

BASIC

Gene SCN1A, Length 12,506 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-220ENST00000641603 MAN1B1Q9UKM7 699 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MSL3P1P0C860 447 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 HSPA1AP0DMV8 641 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 HSPA1BP0DMV9 641 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 POLR2BP30876 1174 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SPIDRQ14159 915 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 EXOC3L4Q17RC7 722 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MREGQ8N565 214 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 KCTD17Q8N5Z5 321 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SPATA5Q8NB90 893 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 STK32AQ8WU08 396 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PBXIP1Q96AQ6 731 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 DPH5Q9H2P9 285 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 LAMC3Q9Y6N6 1575 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CWF19L2Q2TBE0 894 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 EPM2AIP1Q7L775 607 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RBM12BQ8IXT5 1001 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MB21D1Q8N884 522 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 C8orf4Q9NR00 106 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 TRPC5Q9UL62 973 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 FAM47DPA6NHR8 397 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 FIGNQ5HY92 759 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CWF19L1Q69YN2 538 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PPP4R4Q6NUP7 873 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PRUNE1Q86TP1 453 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 LSM14BQ9BX40 385 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PHACTR1Q9C0D0 580 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ISCUQ9H1K1 167 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PLGRKTQ9HBL7 147 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MRPL47Q9HD33 250 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CNOT7Q9UIV1 285 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 E7EWF7 191 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 FMNL1O95466 1100 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 IFNAR1P17181 557 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RAB14P61106 215 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 INPP5AQ14642 412 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 C16orf89Q6UX73 402 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 SEPT8Q92599 483 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ZKSCAN4Q969J2 545 aaPredicted RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 RBM41Q96IZ5 413 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 ZCCHC17Q9NP64 241 aaKnown RBP5.01□□□□□ -1.61
SCN1A-220ENST00000641603 KANSL1LA0AUZ9 987 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 C2orf54Q08AI8 447 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 STX19Q8N4C7 294 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 MINDY2Q8NBR6 621 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 CAPN11Q9UMQ6 739 aa5.01□□□□□ -1.61
SCN1A-220ENST00000641603 PCDH11YQ9BZA8 1340 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MATN2O00339 956 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 GPC4O75487 556 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 KRT31Q15323 416 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 TNNI3KQ59H18 835 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ZBTB41Q5SVQ8 909 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 CABP7Q86V35 215 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ATP11CQ8NB49 1132 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 FPGT-TNNI3KV9GXZ4 949 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ARHGEF11O15085 1522 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SPDYE3A6NKU9 549 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 B4DLN1 442 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 HGSO14964 777 aaPredicted RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 LIFRP42702 1097 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EP400NLQ6ZTU2 488 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ABTB2Q8N961 1025 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 RXFP1Q9HBX9 757 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 GIMAP4Q9NUV9 329 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 COL4A3BPQ9Y5P4 624 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ZHX2Q9Y6X8 837 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 WDR46O15213 610 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 MX2P20592 715 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MAP4P27816 1152 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 ST13P50502 369 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 AKAP4Q5JQC9 854 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SLC9C2Q5TAH2 1124 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MYD88Q99836 296 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 GCOM2Q9BZD3 368 aaPredicted RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 TRPC7Q9HCX4 862 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MBD2Q9UBB5 411 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EYA2O00167 538 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 EXOC3O60645 756 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 GUCY1A3Q02108 690 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 RASSF7Q02833 373 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 CEP170Q5SW79 1584 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 WLSQ5T9L3 541 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ZNF554Q86TJ5 538 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 TRMT44Q8IYL2 757 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 SERBP1Q8NC51 408 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-220ENST00000641603 RNF169Q8NCN4 708 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SKA1Q96BD8 255 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MOV10Q9HCE1 1003 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 MAFGO15525 162 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ORC4O43929 436 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 MMP1P03956 469 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 ARL4CP56559 192 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 B3GNT6Q6ZMB0 384 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 SH3GL1Q99961 368 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 NDST4Q9H3R1 872 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 STOML2Q9UJZ1 356 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 PDIA3P30101 505 aaKnown RBP5□□□□□ -1.61
SCN1A-220ENST00000641603 KCNB1Q14721 858 aa5□□□□□ -1.61
SCN1A-220ENST00000641603 KYNUQ16719 465 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms