RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MEIS3Q99687 375 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 HNRNPABQ99729 332 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 VPS16Q9H269 839 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 KRT82Q9NSB4 513 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 FKBP14Q9NWM8 211 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NDE1Q9NXR1 346 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CLIC5Q9NZA1 410 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 LNPEPQ9UIQ6 1025 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DSEQ9UL01 958 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ZBTB1Q9Y2K1 713 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 UTP11Q9Y3A2 253 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF233A6NK53 670 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 A8MUI8 341 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 HNRNPCL1O60812 293 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PARNO95453 639 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ALADP13716 330 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 KRT2P35908 639 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 PPARGP37231 505 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 TUBP50607 506 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NAA20P61599 178 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 DR1Q01658 176 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 C16orf72Q14CZ0 275 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NCAPHQ15003 741 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 RRS1Q15050 365 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 CWF19L2Q2TBE0 894 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ANO1Q5XXA6 986 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NXNQ6DKJ4 435 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NOP9Q86U38 636 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ANKRD42Q8N9B4 389 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ASAP3Q8TDY4 903 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 UCMAQ8WVF2 138 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 GSDMAQ96QA5 445 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF184Q99676 751 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 LSG1Q9H089 658 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 NMRK1Q9NWW6 199 aa6.18□□□□□ -1.42
SCN1A-216ENST00000637968 MTRF1LQ9UGC7 380 aaKnown RBP6.18□□□□□ -1.42
SCN1A-216ENST00000637968 A2MP01023 1474 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 MYOM2P54296 1465 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 PRAG1Q86YV5 1406 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GOLGA8IPA6NC78 632 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CAPN9O14815 690 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ZNF185O15231 689 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 OXSR1O95747 527 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CAPN1P07384 714 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CYP2C9P11712 490 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CDH3P22223 829 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CDR2Q01850 454 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TBX2Q13207 712 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TMEM214Q6NUQ4 689 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC74BQ6ZQY2 392 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ENGASEQ8NFI3 743 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 KLHL25Q9H0H3 589 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CCSER2Q9H7U1 834 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 RXFP1Q9HBX9 757 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 STX8Q9UNK0 236 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ZMYM6O95789 1325 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ESYT3A0FGR9 886 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 SCG2P13521 617 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 BDNFP23560 247 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 KRT6CP48668 564 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 HSPA2P54652 639 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 SLC34A1Q06495 639 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TWF2Q6IBS0 349 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 C3orf67Q6ZVT6 689 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 RASSF3Q86WH2 238 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TMEM139Q8IV31 216 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GOLM1Q8NBJ4 401 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 DTX3LQ8TDB6 740 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GIPC2Q8TF65 315 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 OSCP1Q8WVF1 389 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GRAMD1AQ96CP6 724 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 LRRC37BQ96QE4 947 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 C2orf49Q9BVC5 232 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CAAP1Q9H8G2 361 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 NOS1P29475 1434 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ADCY9O60503 1353 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 SNTNA6NMZ2 147 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 A1BGP04217 495 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 LYNP07948 512 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 HOXA10P31260 410 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CARSP49589 748 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GPSM2P81274 684 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 RALGDSQ12967 914 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 BNIP1Q12981 228 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 MKRN3Q13064 507 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 MSLNQ13421 630 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 COBLL1Q53SF7 1204 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TTC39AQ5SRH9 613 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 TMEM63BQ5T3F8 832 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 SPATA1Q5VX52 437 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CCDC127Q96BQ5 260 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CENPTQ96BT3 561 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 PRMT1Q99873 361 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 FERMT1Q9BQL6 677 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 CRNKL1Q9BZJ0 848 aaKnown RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ASCC2Q9H1I8 757 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-216ENST00000637968 OCEL1Q9H607 264 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 ABHD10Q9NUJ1 306 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 GIMAP4Q9NUV9 329 aa6.17□□□□□ -1.42
SCN1A-216ENST00000637968 FAIMQ9NVQ4 179 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms