RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 NCK2O43639 380 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 RPL13P26373 211 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 HNRNPH3P31942 346 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TXKP42681 527 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 GYS2P54840 703 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CORO7P57737 925 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 HLTFQ14527 1009 aaKnown RBP eCLIP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 PDIA5Q14554 519 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 HAUS3Q68CZ6 603 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 INTS5Q6P9B9 1019 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 MAATS1Q7Z4T9 603 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TEX11Q8IYF3 940 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 MICALL1Q8N3F8 863 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 PBKQ96KB5 322 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SPAG5Q96R06 1193 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 OSBPL9Q96SU4 736 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 NAP1L3Q99457 506 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 ZMYND12Q9H0C1 365 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 PLAGL2Q9UPG8 496 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 COL4A3BPQ9Y5P4 624 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 MYH10P35580 1976 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 HMGB1P1B2RPK0 211 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 H0YGN5 161 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 STXBP3O00186 592 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 FLOT1O75955 427 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TFRCP02786 760 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 GGCXP38435 758 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 C2orf54Q08AI8 447 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 RPS6KA1Q15418 735 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SLC10A5Q5PT55 438 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 FAM26FQ5R3K3 315 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 PDXDC1Q6P996 788 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TADA2BQ86TJ2 420 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 ZSCAN29Q8IWY8 852 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC26Q8TAB7 109 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF296Q8WUU4 475 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 POP1Q99575 1024 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SNED1Q8TER0 1413 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 LRRIQ3A6PVS8 624 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CALUO43852 315 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 COBLO75128 1261 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CETPP11597 493 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 TECP42680 631 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 DMWDQ09019 674 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 KLHL30Q0D2K2 578 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CUL1Q13616 776 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 ODF2Q5BJF6 829 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 ANKRD40Q6AI12 368 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 IRF2BP1Q8IU81 584 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SPATA4Q8NEY3 305 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 OLIG1Q8TAK6 271 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 RASGRP4Q8TDF6 673 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 BCAS4Q8TDM0 211 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CUL5Q93034 780 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 CAVIN3Q969G5 261 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 LSM14BQ9BX40 385 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 PDGFDQ9GZP0 370 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 STMN4Q9H169 189 aaPredicted RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 METTL14Q9HCE5 456 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 WDR70Q9NW82 654 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 HDAC6Q9UBN7 1215 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 REXO2Q9Y3B8 237 aaKnown RBP4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SCN9AQ15858 1988 aa4.36□□□□□ -1.71
SCN1A-214ENST00000637038 SNAP23O00161 211 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PJA2O43164 708 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 RAD21O60216 631 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MOCS3O95396 460 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 HLA-DOAP06340 250 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 EPB41P11171 864 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 FXR2P51116 673 aaKnown RBP eCLIP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 RAPGEF1Q13905 1077 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CENPPQ6IPU0 288 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 ZNF572Q7Z3I7 529 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC91Q7Z6B0 441 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 CCDC50Q8IVM0 306 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 EIF1ADQ8N9N8 165 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MTMR14Q8NCE2 650 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TBCKQ8TEA7 893 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 RAD54LQ92698 747 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PURBQ96QR8 312 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TMEM47Q9BQJ4 181 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 VAT1LQ9HCJ6 419 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 SLC39A2Q9NP94 309 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 SWAP70Q9UH65 585 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 RASAL2Q9UJF2 1139 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 DAAM1Q9Y4D1 1078 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 LCTP09848 1927 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 PALM3A6NDB9 673 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 SRRM3A6NNA2 597 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 BHMG1C9JSJ3 638 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 GCOM1H8Y6P7 765 aaPredicted RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 EIF3HO15372 352 aaKnown RBP eCLIP4.35□□□□□ -1.717e-8■■■■□ 20.7
SCN1A-214ENST00000637038 KLRC4O43908 158 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 SRGAP2O75044 1071 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 TBCAO75347 108 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 USP17L8P0C7I0 530 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 MYZAPP0CAP1 466 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 GBP1P32455 592 aa4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NOP2P46087 812 aaKnown RBP4.35□□□□□ -1.71
SCN1A-214ENST00000637038 NOVP48745 357 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms