RNA–Protein interactions for RNA: ENST00000627587.2

PDLIM5-223, Transcript of PDZ and LIM domain 5, humanhuman

TSL 2

Gene PDLIM5, Length 1,853 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-223ENST00000627587 MYL1P05976 194 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 CCDC173Q0VFZ6 552 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 ITGB3BPQ13352 177 aaPredicted RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PPP2R5CQ13362 524 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 MCM6Q14566 821 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 TRIM60Q495X7 471 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 NIPA1Q7RTP0 329 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 CATSPER3Q86XQ3 398 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 RAD54LQ92698 747 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 C7orf25Q9BPX7 421 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 TINF2Q9BSI4 451 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 MAF1Q9H063 256 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 XPNPEP3Q9NQH7 507 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PRDM5Q9NQX1 630 aaPredicted RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 KCNH7Q9NS40 1196 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 STK17AQ9UEE5 414 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 KDM3AQ9Y4C1 1321 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 MYMKA6NI61 221 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PPP1R3GB7ZBB8 358 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 IPO5O00410 1097 aaKnown RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 SLC26A4O43511 780 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 ADCY5O95622 1261 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 RPA1P27694 616 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 CCT6AP40227 531 aaKnown RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PSMC6P62333 389 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 TLE2Q04725 743 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 SEMA3FQ13275 785 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PRAMEF19Q5SWL8 479 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 LRCH2Q5VUJ6 765 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 HAUS3Q68CZ6 603 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 NCAPH2Q6IBW4 605 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 POTEGQ6S5H5 508 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 VSIG10LQ86VR7 867 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 CHST13Q8NET6 341 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 LARP4BQ92615 738 aaKnown RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 TOX2Q96NM4 488 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 CDX2Q99626 313 aaPredicted RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 COL25A1Q9BXS0 654 aaPredicted RBP10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 JADE2Q9NQC1 790 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 PDLIM7Q9NR12 457 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 DACH1Q9UI36 760 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 STK24Q9Y6E0 443 aa10.61□□□□□ -0.71
PDLIM5-223ENST00000627587 LTBP2Q14767 1821 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 E9PMD0 336 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 IKBKBO14920 756 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 KIAA0355O15063 1070 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 CLTBP09497 229 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 AKR1A1P14550 325 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 PLCB2Q00722 1185 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 AMPD3Q01432 767 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 CNTN2Q02246 1040 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 ZNF792Q3KQV3 632 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 KMT5BQ4FZB7 885 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 CNNM4Q6P4Q7 775 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 MLKLQ8NB16 471 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 ERMNQ8TAM6 284 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 HSD17B14Q9BPX1 270 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 ZNF577Q9BSK1 485 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 NT5C3AQ9H0P0 336 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 UNC45AQ9H3U1 944 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 AGO4Q9HCK5 861 aaKnown RBP10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 RGL1Q9NZL6 768 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 WRAP73Q9P2S5 460 aaPredicted RBP10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 KIAA1024Q9UPX6 916 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 GDAQ9Y2T3 454 aa10.6□□□□□ -0.71
PDLIM5-223ENST00000627587 TRIM43BA6NCK2 446 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ATP9AO75110 1047 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 RHOBTB3O94955 611 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 NR3C2P08235 984 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 EHHADHQ08426 723 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 DHX8Q14562 1220 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 KCNB1Q14721 858 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ARHGEF16Q5VV41 709 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SARM1Q6SZW1 724 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 TRIM43Q96BQ3 446 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 DNAJC19Q96DA6 116 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 INPP4AQ96PE3 977 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 RIT2Q99578 217 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 EIF2AK1Q9BQI3 630 aaKnown RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 RMND1Q9NWS8 449 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 FBXO40Q9UH90 709 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 FAM184BQ9ULE4 1060 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ARID2Q68CP9 1835 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 MYH11P35749 1972 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 MOXD2PA6NHM9 499 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SMTNL1A8MU46 457 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 DCDC2CA8MYV0 355 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 GAS7O60861 476 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SLITRK3O94933 977 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ZNF865P0CJ78 1059 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 MYCLP12524 364 aaPredicted RBP10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ATP1A3P13637 1013 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 RAG1P15918 1043 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 SLC12A3P55017 1021 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 MYL5Q02045 173 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 CYP4A11Q02928 519 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 MTMR1Q13613 665 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 ARSHQ5FYA8 562 aa10.59□□□□□ -0.71
PDLIM5-223ENST00000627587 C9orf50Q5SZB4 431 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms